Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_K21
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 35 0.085
12_01_0022 + 165056-165408,165477-165624,166248-166248,166305-16... 29 5.6
05_03_0287 - 11639070-11639663 29 5.6
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 28 7.4
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 28 7.4
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040... 28 7.4
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150... 28 9.7
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388... 28 9.7
>06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 34.7 bits (76), Expect = 0.085
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Frame = +1
Query: 337 AMPKKRKGANLSRRTIHARAMHD---IRARRSSEQIQENNADSRVRMSQLRKSRLQEARD 507
A + R R+ I A+A + + A++ +E+++E+ + + Q+R+ + RD
Sbjct: 802 AAREARAAEQQRRKEIRAKAQQEEAELLAQKLAEKLRESEQRRKYYLEQIRERASMDFRD 861
Query: 508 ERNQ-QRQLEPSNGINRDSGVNGDKPAEDVQSTCSTES 618
+ + QR+ + NR S N + ++ + S + ES
Sbjct: 862 QPSPFQRRFPSKDNQNRSSSANSGEDSQIISSANAAES 899
>12_01_0022 +
165056-165408,165477-165624,166248-166248,166305-166602,
166819-167387,167554-168377
Length = 730
Score = 28.7 bits (61), Expect = 5.6
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Frame = +1
Query: 343 PKKRKGANLSRRTIHARAMHDIRA---RRSSEQIQENNADSRVR-------MSQLRKSRL 492
P+K+KG R ++AM D A R++ E +E D R+R +++RK +
Sbjct: 110 PRKKKG----RSWKESKAMDDGAAALRRKAREITKEEEDDERLRGEMVSRVRARIRKQQP 165
Query: 493 QEARDERNQQRQLEPSNGINRDSGVNGDKPA 585
E DE Q + + R +G D PA
Sbjct: 166 DETNDEEIQAHETYLLHDAGRGAGDTSDHPA 196
>05_03_0287 - 11639070-11639663
Length = 197
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +1
Query: 304 VNKYTYFIIVKAMPKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADSRVRMSQLR 480
VN++ I+K +K +G+N + ++ A + R +E+ +E +A+ R+ ++ LR
Sbjct: 109 VNRHLSPPIIKEEARKFEGSNSPQPSVTKLAKRIKQLHRENEEHRERDAERRLEIADLR 167
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +1
Query: 370 SRRTIHARAMHDI-RAR-RSSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQLEP-- 537
SRR+ + HD+ R++ RSS++ + AD+R S +S+ + AR+ + + +L
Sbjct: 107 SRRSGSRTSGHDVSRSKSRSSDRTSSDRADTRDSRSSADQSKNRSAREAHDYRNELSERW 166
Query: 538 SNGINRDSGVNGDKPAEDVQS 600
+ R DK +D +S
Sbjct: 167 EDTERRKGSARTDKNDQDRRS 187
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +1
Query: 340 MPKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEARDERNQ 519
M K KG + + ++H +A ++ E+ + +++ S+ + R RDER
Sbjct: 123 MYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRERKIARRDERLA 182
Query: 520 QRQLEPS 540
Q EP+
Sbjct: 183 QGPREPA 189
>01_07_0031 -
40603243-40603491,40603617-40603799,40603896-40604084,
40604244-40604916,40605583-40605737
Length = 482
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 61 LIFLCNSHVNYTVIVKLSLIFSAI 132
++F CNSHV++ +++ S IFSA+
Sbjct: 52 IVFSCNSHVSFLILMN-STIFSAM 74
>06_01_0194 +
1503350-1503554,1504399-1504490,1504835-1504935,
1506186-1506276,1506616-1506674,1506764-1506884,
1506959-1507027,1507321-1507373,1507688-1507796,
1507895-1508065,1508148-1508306,1508561-1508650,
1508751-1508933,1509837-1510027,1510340-1510787
Length = 713
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +1
Query: 421 SSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQLEPSNGINRDSGVNGDKPA 585
SS+ E+++D+ ++ S ++ RL E +D+R+ + L ++ N D+ GD+ A
Sbjct: 545 SSDASAESDSDNGMQSS--KRIRLYEVKDDRHAEAFLNSTSLANEDALPIGDRVA 597
>02_04_0624 + 24538095-24538183,24538429-24538612,24538725-24538886,
24538988-24539225,24539301-24539370,24539439-24539530,
24539799-24539836,24540018-24540039,24540462-24540618,
24540702-24540753,24542144-24542207,24542279-24542362,
24543418-24543543,24543622-24543818,24543903-24544091,
24544186-24544434,24544507-24544556,24544977-24545059,
24545164-24545449,24545751-24545794,24545878-24546626
Length = 1074
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/87 (21%), Positives = 35/87 (40%)
Frame = +1
Query: 325 IIVKAMPKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEAR 504
+I+K M L + ++HA + + R+ ++ NN D R R R + + +
Sbjct: 875 LILKKMKTSGDQFGLDQSSLHAYEVTPMVFDRTEARVSPNNTDERCRNILTRTAETRSFQ 934
Query: 505 DERNQQRQLEPSNGINRDSGVNGDKPA 585
+ S +NR G N + A
Sbjct: 935 FTGKMDSISQKSEILNRTQGKNSTQLA 961
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,130,896
Number of Sequences: 37544
Number of extensions: 265866
Number of successful extensions: 605
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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