Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_K21
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr... 32 0.54
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 31 0.71
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 31 0.71
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 31 0.71
Z81542-6|CAE17834.1| 365|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z70756-11|CAA94793.2| 368|Caenorhabditis elegans Hypothetical p... 29 3.8
U40422-5|AAA81448.2| 494|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF125447-1|AAD12807.1| 414|Caenorhabditis elegans Hypothetical ... 29 3.8
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 5.0
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 5.0
>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
protein R02F2.2 protein.
Length = 1182
Score = 31.9 bits (69), Expect = 0.54
Identities = 25/88 (28%), Positives = 47/88 (53%)
Frame = +1
Query: 337 AMPKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEARDERN 516
A+P+ ++ A +S T + ++ R RRS + N + R R + R+S ++ +R ER+
Sbjct: 21 AVPRPKRSATVSPST--RNSFYNSR-RRSDANL--NFFNERERQRERRRSMVRASR-ERS 74
Query: 517 QQRQLEPSNGINRDSGVNGDKPAEDVQS 600
+ R+ N +S N D P+ DV++
Sbjct: 75 ESRRASQQNLRKTNSEPNVDMPSIDVEA 102
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 31.5 bits (68), Expect = 0.71
Identities = 27/124 (21%), Positives = 55/124 (44%)
Frame = +1
Query: 385 HARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQLEPSNGINRDSG 564
+A+ + +I E+ + AD Q L E DE+N+Q +++ N +DS
Sbjct: 1118 NAQRIIEIEDELEHERQSRSKADRARAELQRELDELNERLDEQNKQLEIQQDNNKKKDSE 1177
Query: 565 VNGDKPAEDVQSTCSTEST*FCLL*Y*SMYRRKIKLTMETLNMSSPKIRQNKLKIVVEKC 744
+ + D ++ + + +M RRK + L + ++++K KI EK
Sbjct: 1178 IIKFRRDLDEKNMANEDQM--------AMIRRKNNDQISALTNTLDALQKSKAKIEKEKG 1229
Query: 745 ILKQ 756
+L++
Sbjct: 1230 VLQK 1233
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 31.5 bits (68), Expect = 0.71
Identities = 27/124 (21%), Positives = 55/124 (44%)
Frame = +1
Query: 385 HARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQLEPSNGINRDSG 564
+A+ + +I E+ + AD Q L E DE+N+Q +++ N +DS
Sbjct: 1118 NAQRIIEIEDELEHERQSRSKADRARAELQRELDELNERLDEQNKQLEIQQDNNKKKDSE 1177
Query: 565 VNGDKPAEDVQSTCSTEST*FCLL*Y*SMYRRKIKLTMETLNMSSPKIRQNKLKIVVEKC 744
+ + D ++ + + +M RRK + L + ++++K KI EK
Sbjct: 1178 IIKFRRDLDEKNMANEDQM--------AMIRRKNNDQISALTNTLDALQKSKAKIEKEKG 1229
Query: 745 ILKQ 756
+L++
Sbjct: 1230 VLQK 1233
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 31.5 bits (68), Expect = 0.71
Identities = 27/124 (21%), Positives = 55/124 (44%)
Frame = +1
Query: 385 HARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQLEPSNGINRDSG 564
+A+ + +I E+ + AD Q L E DE+N+Q +++ N +DS
Sbjct: 1118 NAQRIIEIEDELEHERQSRSKADRARAELQRELDELNERLDEQNKQLEIQQDNNKKKDSE 1177
Query: 565 VNGDKPAEDVQSTCSTEST*FCLL*Y*SMYRRKIKLTMETLNMSSPKIRQNKLKIVVEKC 744
+ + D ++ + + +M RRK + L + ++++K KI EK
Sbjct: 1178 IIKFRRDLDEKNMANEDQM--------AMIRRKNNDQISALTNTLDALQKSKAKIEKEKG 1229
Query: 745 ILKQ 756
+L++
Sbjct: 1230 VLQK 1233
>Z81542-6|CAE17834.1| 365|Caenorhabditis elegans Hypothetical
protein F49A5.9 protein.
Length = 365
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 268 PKKFKYNLSIYG--YGNGRCWRLFT 200
P N ++G Y NG+CWRLFT
Sbjct: 96 PAPSNINTCVFGFTYINGKCWRLFT 120
>Z70756-11|CAA94793.2| 368|Caenorhabditis elegans Hypothetical
protein T06E4.7 protein.
Length = 368
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 351 FFWHCFHNNKIGIFINHVYVFVLI*NNSQKNLSTI 247
F W+C+ N I IF+N + +F+ +S K++ TI
Sbjct: 5 FSWYCYICNGIAIFLNGILLFL----SSHKSIETI 35
>U40422-5|AAA81448.2| 494|Caenorhabditis elegans Hypothetical
protein T24D8.1 protein.
Length = 494
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = +1
Query: 277 LNQNENVYVVNKYTYFIIVKAMPKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADS 456
LNQN +V N YF+ + M +KR A+LSR +M R ++ + +
Sbjct: 398 LNQNNDV-TANGTRYFVGAERMKRKRSKASLSRLRQQVASM-----RHATIDVSRRAFNW 451
Query: 457 RVRMSQLRKSRLQEARDER 513
+ LR R+ + DER
Sbjct: 452 TRALRNLRGRRVAQRIDER 470
>AF125447-1|AAD12807.1| 414|Caenorhabditis elegans Hypothetical
protein Y14H12B.2 protein.
Length = 414
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 355 KGANLSRRTIHARA-MHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEARDE 510
K L + HA+ D+ RRSS ++ A S ++ Q+ + LQE DE
Sbjct: 124 KSTKLEFKGKHAKGNFADLSQRRSSSASNQSVAQSPPQLQQINSADLQEEEDE 176
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 28.7 bits (61), Expect = 5.0
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Frame = +1
Query: 286 NENVYVVNKYTYFIIVKAMPKKRKGANLSRRTIHA--RAMHDIRA-RRSSEQIQENNADS 456
NE +Y V++ Y I + + KK G + R A R++ ++A ++ I +++ +
Sbjct: 942 NEYIYYVHQRPYSI--RRVHKKNGGGSKIVREFGADERSIFSLKACSHQNQPIPDDSREH 999
Query: 457 RVRMSQLRKSRLQEARDERNQQRQLEPSNG------INRDSGVNGDK-PAEDVQSTCSTE 615
R SQ ++L A + +LE IN+++ + K PAE ++ CS+
Sbjct: 1000 PCRASQC--TQLCFATPSESHPNELEAKCACRQGFMINKENNHSCQKDPAEKIEQLCSSN 1057
Query: 616 ST*F 627
ST F
Sbjct: 1058 STQF 1061
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 28.7 bits (61), Expect = 5.0
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Frame = +1
Query: 286 NENVYVVNKYTYFIIVKAMPKKRKGANLSRRTIHA--RAMHDIRA-RRSSEQIQENNADS 456
NE +Y V++ Y I + + KK G + R A R++ ++A ++ I +++ +
Sbjct: 942 NEYIYYVHQRPYSI--RRVHKKNGGGSKIVREFGADERSIFSLKACSHQNQPIPDDSREH 999
Query: 457 RVRMSQLRKSRLQEARDERNQQRQLEPSNG------INRDSGVNGDK-PAEDVQSTCSTE 615
R SQ ++L A + +LE IN+++ + K PAE ++ CS+
Sbjct: 1000 PCRASQC--TQLCFATPSESHPNELEAKCACRQGFMINKENNHSCQKDPAEKIEQLCSSN 1057
Query: 616 ST*F 627
ST F
Sbjct: 1058 STQF 1061
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,398,130
Number of Sequences: 27780
Number of extensions: 285496
Number of successful extensions: 778
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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