Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_K20
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 95 5e-20
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 84 7e-17
01_05_0760 - 24977608-24978708 29 3.7
10_02_0100 + 5296783-5297568 28 4.8
08_01_0897 - 8839134-8839718 28 4.8
06_01_0767 + 5732573-5732670,5733223-5733278,5733928-5734007,573... 28 4.8
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 28 4.8
10_08_0103 + 14818893-14819082,14819878-14819934,14820948-148210... 28 6.4
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 6.4
12_02_0371 - 18187169-18188386 27 8.5
10_02_0125 - 5537541-5538758 27 8.5
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 94.7 bits (225), Expect = 5e-20
Identities = 62/137 (45%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Frame = +2
Query: 98 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXX 277
RVV + L SGLLLVTGPF N P+RR+ Q YVI TST++ + + K F+D YF
Sbjct: 115 RVVFLKQLKSGLLLVTGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF--- 170
Query: 278 XXXXXXXXXXXEGDDIFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYL 451
EG ++F T+KE K +P E +K DQK VD +IKAI A PD L+ YL
Sbjct: 171 SRDKKQKAKKTEG-ELFETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD---LKTYL 225
Query: 452 KAAFGLRSSQYPHRLRF 502
A F LR PH + F
Sbjct: 226 GARFSLRDGDKPHEMVF 242
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 84.2 bits (199), Expect = 7e-17
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Frame = +2
Query: 98 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXX 277
RVV + L SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D YF
Sbjct: 92 RVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYF--- 147
Query: 278 XXXXXXXXXXXEGDDIFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYL 451
EG ++F T+KE K +P + +K DQK VD +IKAI PD L
Sbjct: 148 ARDKKAKAKKTEG-ELFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPD-------L 198
Query: 452 KAAFGLRSSQYP 487
K+ G R+S++P
Sbjct: 199 KSYLGARNSRWP 210
>01_05_0760 - 24977608-24978708
Length = 366
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 351 FHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARANIPIGCASKS*N 515
+H +S+ + R+ + + P+ P RR SA + P+D+ R + + K N
Sbjct: 222 YHTNSSSSLARKGHK--NAPARRPPARRASARITSDPADAFRPVVSVAATKKQHN 274
>10_02_0100 + 5296783-5297568
Length = 261
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 390 TRL*SKPSEPDPTRRCSADTSKRPSDSARANIP 488
TR SKP P PT+ SA + +D A A+ P
Sbjct: 142 TRSSSKPPAPAPTKTASASDHAKKTDMAAAHKP 174
>08_01_0897 - 8839134-8839718
Length = 194
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -2
Query: 471 RSPKAALRYPRSTFLSGRAPMALITASSTVF*SVLRCSDGTYFSFFVAKMSSP 313
R+ +AA+R +T S + AL A S S+L C DG S F SSP
Sbjct: 22 RAARAAVRIAATTTASSPSSPALAAALSRTP-SLLDCMDGDDDSIFYTPASSP 73
>06_01_0767 +
5732573-5732670,5733223-5733278,5733928-5734007,
5735334-5735372,5735563-5735950,5736049-5737562
Length = 724
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 406 SHRSPTRQEGAPRIPQSGLR 465
SHR P QEGAP P S +R
Sbjct: 157 SHRWPEAQEGAPAFPPSTMR 176
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 342 RNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAN 482
+NT LS+AK + +S ++ KPS + + +KR SD+ R +
Sbjct: 639 KNTRKLSNAKESKDESPQVEPKPSSANDCDNPISQVAKRASDNIRGH 685
>10_08_0103 +
14818893-14819082,14819878-14819934,14820948-14821056,
14821137-14821362,14821521-14821637,14821735-14821893
Length = 285
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 282 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSK 455
S SN+QSN T K+R F +A+ + R S+R +P D A TSK
Sbjct: 212 SDSNIQSNKSAEHTGTTVKRRERFRCVNARIVLRTSSR--RRPIGVDFWDEYFASTSK 267
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 183 FLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 305
FL+ + PP + H C N S++I R + N QSN
Sbjct: 545 FLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
>12_02_0371 - 18187169-18188386
Length = 405
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +3
Query: 330 PQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRC 437
PQ KRN H S RRQ TRL + P R C
Sbjct: 365 PQPKRNLRHHSGHYARRRQVTRLVVTGANAVPVRPC 400
>10_02_0125 - 5537541-5538758
Length = 405
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +3
Query: 330 PQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRC 437
PQ KRN H S RRQ TRL + P R C
Sbjct: 365 PQPKRNLRHHSGHYARRRQVTRLVVTGANAIPVRPC 400
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,975,645
Number of Sequences: 37544
Number of extensions: 298396
Number of successful extensions: 927
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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