Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_K18
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    28   1.7  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   3.9  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   5.2  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   6.9  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   9.1  

>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 309 HKFREICFYNILKELENRGVVLKKHFPEVYSRLTAYVDGTSDRFIPMTIYPKDVSSGK-S 485
           H+ ++    + + ELE RG++L K   E +S    +  GT+D+ +  T+     +S + S
Sbjct: 48  HEDKKFVNVDHVSELETRGLLLLKEDSERFSETLGH--GTADKRMLQTLISSGTTSDRIS 105

Query: 486 FMCIIIPDNDIES 524
            + +++ ++ I +
Sbjct: 106 ALTLLVQESPIHA 118


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 332 ETYFSEFVSCSGIFLARHVHFGCQN*RLPFVWCVFTVSPL 213
           ETY+     C+G  L   +H G  +   PF+    T++P+
Sbjct: 223 ETYYGVLTKCAGASLGMRLHSGPSHPYAPFI-LTCTLNPI 261


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -3

Query: 714 TVNIYSMTNTSNCNCKNLLLPIDTSNSVSRKCLCHYFTCE--W--TADAASGRC 565
           T  IYS  +  +  C   +  ID S+   + C C Y  C   W    +  +GRC
Sbjct: 4   TQEIYSSEDEDDMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRC 57


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 209 TAKEKQ*KH-TRRMGDVNFDIQNG 277
           T K+K   H T+R  DVNF  QNG
Sbjct: 688 TVKDKSHVHDTQRSSDVNFSRQNG 711


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 18  TRKWSSYVIPTIPSXXVILYVAVCIISEVPTKGAVKWE 131
           T K ++YV P+  +  V+ Y   CI+  V T  A + E
Sbjct: 262 TTKTTTYVGPSPSASSVVAYTTKCIVVPVITTAASQSE 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,300
Number of Sequences: 5004
Number of extensions: 71688
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)