Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_K18
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   4.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.5  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 615 INIFYLRNLRYRSVIINFYNYN 680
           IN+FY      RS  IN+YN N
Sbjct: 438 INVFYWFAYLSRSERINYYNVN 459


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 583 CRERSMPTS-TVVTLPSVGVPLSMSLSGIMMHMNDFPLDTSLG*MVMGMNLSLVPST 416
           C +  +P S T+++    G   S  +SGI      F +    G +    N SLVP+T
Sbjct: 326 CIDMEVPYSGTLISHYEDGETKSRFISGIRSEQTIFDVKPEFGSIYFLGNYSLVPTT 382


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 444 PMTIYPKDVSSGKSFMCIIIPDN 512
           P  + PK + +GK    +IIP N
Sbjct: 38  PCILKPKPLWTGKQISSLIIPGN 60


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 297 HFSRPPRPFWMSKLTSP 247
           H ++PP+P   +K TSP
Sbjct: 246 HATKPPKPQTKTKPTSP 262


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 398 INFGEVFFEHDPPVLKLFQYVVET 327
           IN   +  EHDP +  + QY++ +
Sbjct: 45  INSRNMDIEHDPGLAAVLQYLIRS 68


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 16/62 (25%), Positives = 21/62 (33%)
 Frame = +2

Query: 146  AVRQVTFEQNRNGHHTRAIPSTAKEKQ*KHTRRMGDVNFDIQNGRGGREKCRYSSQIQRN 325
            A++  TF    NGH     P            R G  +   QNGR  R   +       N
Sbjct: 1742 AMQFQTFPHPGNGHSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSGTHN 1801

Query: 326  MF 331
            +F
Sbjct: 1802 VF 1803


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,190
Number of Sequences: 438
Number of extensions: 4846
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)