Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_K17
         (806 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    24   1.2  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    24   1.2  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   2.2  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    23   2.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.7  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +1

Query: 553 KLWIYMTKLHHHHLCNQSSYQSTLRGTHQS*LASTVRS 666
           +++ Y++  HHHH    +++ +   G+     +ST  S
Sbjct: 59  RMYPYVSAAHHHHQAAAAAFGAAASGSMVPSFSSTASS 96


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +1

Query: 553 KLWIYMTKLHHHHLCNQSSYQSTLRGTHQS*LASTVRS 666
           +++ Y++  HHHH    +++ +   G+     +ST  S
Sbjct: 59  RMYPYVSAAHHHHQAAAAAFGAAASGSMVPSFSSTASS 96


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 556 LWIYMTKLHHHHLCNQSSYQSTLRGTHQS*LASTVRS 666
           ++ Y++  HHHH    +++ +   G+     +ST  S
Sbjct: 1   MYPYVSAAHHHHQAAAAAFGAAASGSMVPSFSSTASS 37


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 556 LWIYMTKLHHHHLCNQSSYQSTLRGTHQS*LASTVRS 666
           ++ Y++  HHHH    +++ +   G+     +ST  S
Sbjct: 1   MYPYVSAAHHHHQAAAAAFGAAASGSMVPSFSSTASS 37


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 528 PDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRD 632
           P    K    + LHDKTP      PV  ++ P  D
Sbjct: 288 PGLTHKYTHEIKLHDKTPFLKRPYPVPFALRPAVD 322


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 702 PLFQLNLTILV*TPYSTCQLTLVCPSEG 619
           P F  ++ +L    +S   + L+CP++G
Sbjct: 231 PAFSTDIKVLGYQRHSKQNVALLCPAQG 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,477
Number of Sequences: 336
Number of extensions: 4052
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)