Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_K17
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 168 5e-42
09_03_0087 - 12237226-12237346,12237423-12237555,12237641-122377... 120 1e-27
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760 32 0.62
04_04_1095 - 30839573-30839769,30839817-30839964,30840421-308409... 31 1.1
01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897 30 2.5
08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202 29 4.4
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 28 7.6
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 168 bits (408), Expect = 5e-42
Identities = 80/180 (44%), Positives = 114/180 (63%), Gaps = 5/180 (2%)
Frame = +3
Query: 282 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDR-----ERKKQLGKAKIGGSFELVNSE 446
P++W S +V GGG+ + KK E L +++ +G A IGG F L+N +
Sbjct: 132 PVSWLSFLLLLVTGGGIIVYYDKEKKRHIEELKNRTSAVKQEPSVGTAAIGGPFNLLNHD 191
Query: 447 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQ 626
GK V DF GKW L+YFGFTHCPDICPDEL+K+A +D K + + PVFI+VDP+
Sbjct: 192 GKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAID-KIKEKAKMEVVPVFITVDPE 250
Query: 627 RDTPELVGKYCKEFTPRLLGLTGTKEQVQQACKSYXVYFXAGPQXVDNDYIVDHTIIVYL 806
RDT E V Y EF P L+GLTGT +++++ ++Y VY+ + +DY+VDH+I++YL
Sbjct: 251 RDTVEQVRDYVNEFHPNLIGLTGTTDEIRKVARAYRVYYMK-TEEEGSDYLVDHSIVMYL 309
>09_03_0087 -
12237226-12237346,12237423-12237555,12237641-12237730,
12238992-12239198,12239738-12239813,12240019-12240148,
12241024-12241121
Length = 284
Score = 120 bits (290), Expect = 1e-27
Identities = 68/196 (34%), Positives = 112/196 (57%), Gaps = 5/196 (2%)
Frame = +3
Query: 234 VRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEK---QEALDRERKKQL- 401
+RQ A + P+ P+ + + + ++V GL F+ Y +++ QEA K+
Sbjct: 57 MRQFAEENEANPQ---PLIYYVVPSALLVFAGLVTFVHYNDEKRAVTQEAQQTSVPKRCT 113
Query: 402 -GKAKIGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKT 578
+ IGG F+L ++E K V + G W L+YFG+T CPDI P E++K+A+VV L + +
Sbjct: 114 TNRPAIGGPFKLYDTENKEVTESKLRGNWTLMYFGYTSCPDIGPAEVQKMADVVKLLE-S 172
Query: 579 PSSPPLQPVFISVDPQRDTPELVGKYCKEFTPRLLGLTGTKEQVQQACKSYXVYFXAGPQ 758
+ P+FI++DPQRD+P + Y EF PR++GLTG+ V+Q + Y V+F
Sbjct: 173 KYGTKITPLFITIDPQRDSPAQLKAYLSEFDPRIIGLTGSINAVRQIAQEYRVFFKK-VD 231
Query: 759 XVDNDYIVDHTIIVYL 806
+ DY+V+ + +YL
Sbjct: 232 DIGQDYLVESSHNMYL 247
>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
Length = 289
Score = 31.9 bits (69), Expect = 0.62
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 448 PSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTT 314
PS+ TSS + P + S S S +CF+ + PPPTT
Sbjct: 130 PSQCTSSAMAPALSPASSSVTSSSGDACFAAAATTTTTMYPPPTT 174
>04_04_1095 -
30839573-30839769,30839817-30839964,30840421-30840903,
30841419-30841910,30842267-30842362
Length = 471
Score = 31.1 bits (67), Expect = 1.1
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Frame = +3
Query: 303 AATVVVGGGLTAFMMYVKKEKQ-EALDRERKKQLGKAKIGGSFE---LVNSEGKLVKSAD 470
A +V G+ A+ K+ + E +D R++ ++ G E +++++G +D
Sbjct: 142 AVKLVEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVISADGIKTPISD 201
Query: 471 FLGKWMLIYFGFTHCPDICPDELEKLAEVVD-LHDKTPSSPPLQPVFISVD 620
GK + +YFG CP C ++L E D L P + Q +FIS+D
Sbjct: 202 LNGKTIGLYFGAHWCPP-CRAFTKQLREAYDELKALRPGN--FQVIFISMD 249
>01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897
Length = 553
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = -2
Query: 469 SALLTNLPSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTTT 311
SAL +P ++++ + A S L+ ++ +C +FL++ + PPP+T+
Sbjct: 81 SALRARIPPAVSTAR--SVLAASSNVNLTNAATNCLTFLSFSTHRLSPPPSTS 131
>08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202
Length = 288
Score = 29.1 bits (62), Expect = 4.4
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Frame = +3
Query: 402 GKAKIGGSFELVNSEGKLVKSADFLGK-WML---IYFGFTHCPDICPDELEKLAEVVDLH 569
G+A G E V E +L L + W+L Y P +E L +DL
Sbjct: 135 GRAPKGRKTEWVMHEFRLEPQPLHLKEDWVLCRVFYKTRQTIPSPSSEEAVTLPNELDL- 193
Query: 570 DKTPSSPPLQPVFISVD-PQRDTPELVGKY 656
TPS PPL +I+ D TP +VG Y
Sbjct: 194 PATPSLPPLIDAYIAFDSAPTTTPSMVGSY 223
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +3
Query: 366 QEALDRERKKQLGKAKIGGSFELV-NSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELE 542
++A + + L + G + V +G V ++ +GK +L+YF CP C L
Sbjct: 340 EKAKAKAESQTLESLLVTGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCPP-CRAFLP 398
Query: 543 KLAEVVDLHDKTPSSPPLQPVFISVDPQRDT 635
KL V + + + VFIS D ++ +
Sbjct: 399 KL--VNEYNKIKEKHNDFEIVFISSDREQSS 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,899,883
Number of Sequences: 37544
Number of extensions: 431960
Number of successful extensions: 1201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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