Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_K14
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    81   3e-16
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    80   5e-16
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    79   9e-16
10_03_0011 + 7034101-7034122,7035077-7035699                           27   5.3  
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691...    26   9.2  
08_01_0842 - 8252232-8253155                                           26   9.2  

>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 81.0 bits (191), Expect = 3e-16
 Identities = 34/74 (45%), Positives = 48/74 (64%)
 Frame = +1

Query: 88  VICGXSSXHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFK 267
           V CG  S H+QKS C+ CGYPAA++R Y+WSVKA          MR+++ V RRF++ F+
Sbjct: 20  VRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFR 79

Query: 268 EGKPTPPKKAVASS 309
           EG    P+K  A++
Sbjct: 80  EGTEATPRKRAAAA 93



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 36 QGPSSFGQRRNHPHPLC 86
          +G  SFG+RRN  H LC
Sbjct: 3  KGTGSFGKRRNKTHTLC 19


>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 80.2 bits (189), Expect = 5e-16
 Identities = 34/72 (47%), Positives = 46/72 (63%)
 Frame = +1

Query: 88  VICGXSSXHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFK 267
           V CG  S H+QKS C+ CGYPAA++R Y+WSVKA          MR+++ V RRF++ F+
Sbjct: 41  VRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFR 100

Query: 268 EGKPTPPKKAVA 303
           EG    P+K  A
Sbjct: 101 EGTEATPRKRAA 112



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 36 QGPSSFGQRRNHPHPLC 86
          +G  SFG+RRN  H LC
Sbjct: 24 KGTGSFGKRRNKTHTLC 40


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score = 79.4 bits (187), Expect = 9e-16
 Identities = 34/74 (45%), Positives = 48/74 (64%)
 Frame = +1

Query: 88  VICGXSSXHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFK 267
           V CG  S H+QKS C+ CGYPAA++R Y+WSVKA          MR+L+ V +RF++ F+
Sbjct: 20  VRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYLRHVPKRFKSNFR 79

Query: 268 EGKPTPPKKAVASS 309
           EG    P+K  A++
Sbjct: 80  EGTEAAPRKKGAAA 93



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 36 QGPSSFGQRRNHPHPLC 86
          +G  SFG+RRN  H LC
Sbjct: 3  KGTGSFGKRRNKTHTLC 19


>10_03_0011 + 7034101-7034122,7035077-7035699
          Length = 214

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 13  VNRCQLCXRVPQASVSAXIIPIRYAVICGXSSXH-IQKSKCAQCGYPAAKLRS 168
           +N C +  R  Q  V      I+Y VI   S+ H I +S+  +  YP   L S
Sbjct: 56  INSCMMVGRSAQNIVPILFSFIKYCVITVASALHDIPRSQTLEMAYPYKPLGS 108


>10_08_1052 -
           22567937-22568329,22568436-22568669,22568787-22569111,
           22569239-22569484,22569576-22569916,22570070-22570150,
           22570275-22570394,22570549-22570650,22570900-22571035,
           22571210-22571362,22572605-22572906
          Length = 810

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
 Frame = +3

Query: 54  GQRRNHPHP-------LCSHLWXLVXSHSKIKM 131
           GQRR+HPHP       LCS+L  L      ++M
Sbjct: 46  GQRRHHPHPHGFVNLDLCSYLRFLAWVPGALRM 78


>08_01_0842 - 8252232-8253155
          Length = 307

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 3   LSACQSLPTLPQGPSSFGQRRNHPHPLCS 89
           +S  +SL +  + P + G +R HPHP C+
Sbjct: 167 VSKGRSLVSSGKPPLAGGVKRKHPHPPCA 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,416,547
Number of Sequences: 37544
Number of extensions: 138094
Number of successful extensions: 302
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)