Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_K13
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    36   0.004
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    28   1.6  
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...    28   1.6  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    27   2.7  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    26   4.8  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   4.8  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    26   6.3  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   8.4  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 345 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 482
           VY+PD          Y+P+    V  YYPQQP  P+F  ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 154 KRIPTIPTMETWTPFPTARATVTE 225
           K IPT PT E+  PFP+  A  T+
Sbjct: 286 KSIPTTPTGESLWPFPSENANKTQ 309


>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -2

Query: 566 LWYFRSGRRFGSLSNRYQSG*VQFDLFSGVSQLGRLSGAEDRVLWL 429
           L Y   G+ +  ++    +G ++   F GV +LG + G   + +W+
Sbjct: 26  LTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWI 71


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -2

Query: 302 HERGH--ATAHSSGVVVRIIVTA 240
           H RGH  ATA + G V+R+I T+
Sbjct: 176 HPRGHLIATASAKGTVIRVITTS 198


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 310 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 450
           S   H    +    + +++   +P+P  YR    +  TLSN++T  S
Sbjct: 45  SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 276 VGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADT 386
           +G GM+AF++  P     P+  +VY    RR T  ++
Sbjct: 9   LGTGMSAFIFHYPFLKALPNHFEVYAAWERRATSTES 45


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 311 LAVHERGHATAHSSGVVVRIIVTAHDQASSVTVA 210
           L  H+R  +  H+S  +V I+V +HD AS+   A
Sbjct: 254 LGGHKRLSSRNHNSQPLVCILVGSHDHASAAVAA 287


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 291 AAFMYRQPEAAQAPSTGQVYIP 356
           A F+Y +PE+  +PS G  YIP
Sbjct: 318 ATFLYTKPESKPSPSRG-TYIP 338


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 402 QENEVYYPQQPENPIFSPTQATELADPTE 488
           + N   YPQ  + P+  P  A    DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,297
Number of Sequences: 5004
Number of extensions: 52762
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)