Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_K12
(391 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal prote... 99 1e-21
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 29 0.88
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 29 0.88
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 29 0.88
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 27 3.6
Z81588-4|CAB04713.1| 413|Caenorhabditis elegans Hypothetical pr... 27 6.2
U97404-2|AAB93309.1| 795|Caenorhabditis elegans Acid-sensing/am... 27 6.2
AL031624-1|CAA20940.1| 413|Caenorhabditis elegans Hypothetical ... 27 6.2
Z93389-9|CAB07670.2| 391|Caenorhabditis elegans Hypothetical pr... 26 8.2
>L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 35 protein.
Length = 123
Score = 99.1 bits (236), Expect = 1e-21
Identities = 51/93 (54%), Positives = 64/93 (68%)
Frame = +1
Query: 16 LRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 195
LRV+KVTGG ASKLSK+RVV K IAR+ V +Q K LR Y + KYKP+DLR KKTRA
Sbjct: 31 LRVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRA 90
Query: 196 MRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 294
+R+ LT HE +++ K+ K R +AVKA
Sbjct: 91 IRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 29.5 bits (63), Expect = 0.88
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 145 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 258
K ++ +D K+ R +RKA+TK E KIK KE K
Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 29.5 bits (63), Expect = 0.88
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 145 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 258
K ++ +D K+ R +RKA+TK E KIK KE K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 29.5 bits (63), Expect = 0.88
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 145 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 258
K ++ +D K+ R +RKA+TK E KIK KE K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 106 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 258
+ QK K ++ K+KK K + KK + K K + + + R+E RKK
Sbjct: 288 FEQKKKKKVKKSKKSKKDKK---KEKKEKKKSKKANKEKEERRARREQRKK 335
>Z81588-4|CAB04713.1| 413|Caenorhabditis elegans Hypothetical
protein T07D10.4 protein.
Length = 413
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 276 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 184
S W+ + +FPR+D C S + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262
>U97404-2|AAB93309.1| 795|Caenorhabditis elegans
Acid-sensing/amiloride-sensitiveion channel family
protein 1 protein.
Length = 795
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 306 IIYSSFNGIDSRWEERFLSDLFPRLDLCFVFSKSLAHST 190
I+ SFNG + + F+ L P CF + + L ++T
Sbjct: 463 IMKCSFNGRECNVKHDFVEYLDPTYGACFTYGQKLGNNT 501
>AL031624-1|CAA20940.1| 413|Caenorhabditis elegans Hypothetical
protein H16D19.1 protein.
Length = 413
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 276 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 184
S W+ + +FPR+D C S + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262
>Z93389-9|CAB07670.2| 391|Caenorhabditis elegans Hypothetical
protein T13F3.2 protein.
Length = 391
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 106 YHQKMKVNLRNHYKNKKY-KPLDLRAKKTRAMRKALTKH 219
Y ++ +L NHYKN + + R K A+ K+L KH
Sbjct: 332 YTNQLASDLHNHYKNDLHLEQYAQRVLKMMAIVKSLQKH 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,963,250
Number of Sequences: 27780
Number of extensions: 94867
Number of successful extensions: 377
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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