Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_K10
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0205 + 15167902-15168019,15168107-15168162,15168349-151684... 58 8e-09
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 47 2e-05
08_01_0061 - 428885-428920,429021-429164,429376-429541,429612-42... 40 0.002
02_04_0660 + 24799959-24800076,24800597-24800652,24800864-248009... 39 0.004
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200... 30 2.5
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 29 5.8
>07_03_0205 +
15167902-15168019,15168107-15168162,15168349-15168479,
15168567-15168702,15169145-15169303,15169363-15169431
Length = 222
Score = 58.0 bits (134), Expect = 8e-09
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Frame = +1
Query: 202 NGKINLVSFLEAATDLVYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSC--LLMLML 375
+G I FLE ++ ++++ G+A + VK D+ GNI R++ Y D + L ++
Sbjct: 20 SGVILTKPFLEVCKHILPVLDKFGSAMSIVKNDIGGNITRLETKYASDPSKYEQLHSMVK 79
Query: 376 EEINN----GKAPVTEGVLWLNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVK 543
EI++ + T G+LWL RA+ F V + NL + M + AY ++K
Sbjct: 80 VEISSKTAKSSSSCTNGLLWLTRAMDF----LVALFHNLVQHPDWQMSQACSDAYSKTLK 135
Query: 544 KYHSWVTQQLF 576
K+H W+ F
Sbjct: 136 KWHGWLASSSF 146
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 47.2 bits (107), Expect = 2e-05
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Frame = +1
Query: 220 VSFLEAATDLVYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSC--LLMLMLEEINNG 393
++FL + L+ +++++G A ++ D+Q NI+R+++ Y D + L ++ +E++ G
Sbjct: 85 LTFLALSHLLLQVLDKIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEG 144
Query: 394 KA----PVTEGVLWLNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWV 561
A +LWL R+ + F + + LE +K + AY ++K +H W+
Sbjct: 145 TARKVDSCARAILWLTRS-MDFTIALLQRLEEDSDQK--CFAQLVESAYMVTLKPWHGWI 201
Query: 562 TQQLFIFICKMSP 600
+ + K+ P
Sbjct: 202 SSAAYKIAMKLIP 214
>08_01_0061 -
428885-428920,429021-429164,429376-429541,429612-429742,
429884-429939,430513-430687
Length = 235
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/130 (21%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Frame = +1
Query: 247 LVYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDEN--SCLLMLMLEEINNGKAP----VT 408
++++++ +G ++ D+Q N+ R++ D + S L ++ EE+ G + T
Sbjct: 54 IIHVLDEIGPTLLVLRQDIQQNVQRLQDVLARDPSKYSSLTAIVTEEVEEGTSKKANSCT 113
Query: 409 EGVLWLNRALL-FFELVFVD----ILENL-QAKKEINMKYVFTKAYEGSVKKYHSWVTQQ 570
+LWL A+L + ++ +LE L + +++ + KAY ++K +H W++
Sbjct: 114 RAILWLASAVLRILPIRSINFSKHLLEGLLNTCDQSSLREIVEKAYITTLKPWHGWISSA 173
Query: 571 LFIFICKMSP 600
+ K+ P
Sbjct: 174 AYRVAQKLIP 183
>02_04_0660 +
24799959-24800076,24800597-24800652,24800864-24800954,
24801463-24801515,24801626-24801757,24801847-24801882
Length = 161
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 226 FLEAATDLVYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSC--LLMLMLEEINNGKA 399
FL+ ++ ++++ G A A VK D+ GNI R++ Y D + L ++ EE+ N A
Sbjct: 28 FLDVCKQILPVLDKFGAAMALVKSDIGGNITRLENKYSSDPSKYEQLYSMVQEEVQNKTA 87
Query: 400 PVTEGVL 420
V +L
Sbjct: 88 KVIYALL 94
>04_01_0178 +
2006369-2006494,2006582-2006664,2007693-2007819,
2008579-2008638,2009606-2009735,2009821-2010047,
2010226-2010318,2010395-2010466,2011392-2011532,
2012045-2012047,2012387-2012443,2012909-2012995,
2013081-2013116
Length = 413
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 553 SWVTQQLFIFICKMSPTFAQMIKSFGVDGDIKSFETKLAS 672
+W ++ +F++ + FA ++++ VDGD+ S+ KL S
Sbjct: 340 AWFSRDIFLYRLSKTDFFAVILEATVVDGDLLSWTRKLKS 379
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +1
Query: 475 NLQAKKEINMKYVFTKAYEGSVK---KYHSWVTQQLFIFICKMSPTFAQMIKSFGVDGDI 645
+L KK++N+KY + G K KYHS +T F F + +S +D I
Sbjct: 256 SLDTKKDVNLKYKDDRLILGKAKIFSKYHSEITYYNF--------NFYEAGRSISLDTGI 307
Query: 646 KS-FETKLASFNITLHLNRCKIDDFFKDNN 732
+ + S N + LNR K + + NN
Sbjct: 308 SNELSQEEISINDKMKLNREKTNSSDEYNN 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,820,494
Number of Sequences: 37544
Number of extensions: 295114
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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