Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_K08
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    28   2.0  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    26   8.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   8.2  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 861 ILDKFMKHFLFRKLKWNFRYCFKQXCEXYQVFFKISSL 748
           + +  +K  + + +K + R+CFKQ  E Y ++ K   L
Sbjct: 527 VYETALKLPVIKYVKGDNRFCFKQLLEYYDIYLKFKLL 564


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 494 REGNRSSSVTVVLVAHSAGLDLRAVSDRGVGGELDN 387
           REG      T+VLV    G +L+A    G GG  ++
Sbjct: 311 REGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFES 346


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 698 FIFIHLSPSTRTKMLFIKELILKKTWXNSXYCLKQ*RKFHFNLRN 832
           F   HL   T +  L+++ L L+K W       K+      N++N
Sbjct: 821 FTIRHLGAYTASYTLYVESLQLRKLWVEKINVAKKRHSQKINIKN 865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,497,466
Number of Sequences: 5004
Number of extensions: 70673
Number of successful extensions: 194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)