Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_K06
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.0  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.8  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -1

Query: 291 TSSAA*STVRLVPSGSMREYCPETVPPTRVST*LLKSP-VLGSATSYAKLV*SASALANG 115
           TS++  ++  + P+G+       TVPPT  ST L  +     ++  Y     +++ LA  
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448

Query: 114 VCTTELWATATKAESTTKNL 55
            CTT      T    T+  L
Sbjct: 449 NCTTSTSVPYTSTPVTSTPL 468



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -1

Query: 297 PFTSSAA*STVRLVPSGSMREYCPETVPPTRVST*LLKSPVLGSATSYAKLV*SASALAN 118
           P TS++  ++  + P+G+       TVPPT  S+    +P   ++TS      S     +
Sbjct: 279 PTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS--TSTPPPPASTSSTGTSSSPLPSTS 336

Query: 117 GVCTTELWATATKAESTT 64
             CTT      T   STT
Sbjct: 337 TSCTTSTSIPPT-GNSTT 353



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -1

Query: 297 PFTSSAA*STVRLVPSGSMREYCPETVPPTRVST*LLKSPVLGSATSYAKLV*SASALAN 118
           P TS++  ++  + P+G+       TVPPT  S+    +P   ++TS      S     +
Sbjct: 333 PSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS--TSTPPPPASTSSTGTSSSPLLSTS 390

Query: 117 GVCTTELWATATKAESTT 64
             CTT      T   STT
Sbjct: 391 TSCTTSTSIPPT-GNSTT 407


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 TLTTPASRTTWPTPALGTSRVRLKPAWEVPSPGST 236
           T+ +P S TT PTP   T++     A E  + G+T
Sbjct: 565 TIPSPGSATTKPTPGSATTKPTPVSATEEHAAGTT 599



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 132 TLTTPASRTTWPTPALGTSRVRLKPAWEVPSPGSTLSS 245
           T  TP S TT PTP   T           P+ G+T ++
Sbjct: 574 TKPTPGSATTKPTPVSATEEHAAGTTKPAPAAGATATA 611


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 147 ASRTTWPTPALGTSRVRLKPAWEVPSPGSTLSSNPTVPSALWTTPPMT*TDS 302
           AS T   T  + TS   +  + ++P+  STLSS  +  S+       T TDS
Sbjct: 238 ASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETSSTLTDS 289


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 123 LEQTLTTPASRTTWPTPALGTSRVRLKPAWEVPSPGSTLS-SNPTVPSA 266
           L + + T  S T  P PA G + V   P  ++P P    S  N TV SA
Sbjct: 80  LYRNVNTQVSHTAIPNPANGYAAVYGGPPSQLPPPPQPQSHPNVTVISA 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,117
Number of Sequences: 5004
Number of extensions: 41168
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)