Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_K06
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1146 - 28004896-28005554,28005664-28005844 31 1.3
11_01_0066 - 536281-537196,537397-537452 30 2.3
09_02_0082 - 4060018-4061604 29 3.0
06_03_0905 + 25843547-25844314 29 3.0
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 29 3.0
04_04_1125 + 31085106-31085714 29 4.0
10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283 28 7.0
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 28 7.0
04_03_0368 + 15004949-15005659,15005789-15005848 28 7.0
12_02_0023 - 12404617-12405285 28 9.2
06_01_0386 - 2767806-2767955,2768150-2768239,2768317-2768373,276... 28 9.2
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 135 LTTPASRTTWPTPALGTSRVRLKPAWEVPSPGSTLSSNPTVPSALWTTP 281
+ +PAS P PA T + P PSP ++S P+ +TP
Sbjct: 157 MPSPASSPPSPAPAAATPSLAPSPVATTPSPSPSVSPMAPAPAPTTSTP 205
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 141 TPASRTTWPTPA-LGTSRVRLKPAWEVPSPGSTLSSNPTVPSALWTTPPM 287
TP + PTP + T+ VR P P P +T++ PT P + TT P+
Sbjct: 244 TPTTTRASPTPPPIPTATVRPPP----PLPRATVTPTPTTPPSTATTTPI 289
>09_02_0082 - 4060018-4061604
Length = 528
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/55 (40%), Positives = 25/55 (45%)
Frame = +3
Query: 135 LTTPASRTTWPTPALGTSRVRLKPAWEVPSPGSTLSSNPTVPSALWTTPPMT*TD 299
L TPA+ TT P L PA V +P TL+ VP WT PP T D
Sbjct: 36 LRTPAAPTTTRGPTLLFLPAPPVPAPLVHAP-PTLAPPLVVPRGGWTIPPTTSND 89
>06_03_0905 + 25843547-25844314
Length = 255
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 159 TWPTPALGTSRVRLKPAWEVPSPGSTLSSNPTVPSALWTTPPMT 290
T+PTP + T V + P P+P T P + TPP+T
Sbjct: 102 TYPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYPTPPVT 145
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 159 TWPTPALGTSRVRLKPAWEVPSPGSTLSSNP-TVPSALWTTP 281
T+PTP + T V + P P+P T + P T P+ TTP
Sbjct: 120 TYPTPPVTTPPVVVGPPVTYPTPPVTYPTPPVTYPTPPTTTP 161
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 179 GDFKSQVETRVGGTVSGQYSLI---EPDGTKRTVDYAADDVNGFNAVVRKD 322
GDF Q+++R G S +YSLI E + K + D V + +V +D
Sbjct: 477 GDFFDQLKSRSKGYASMEYSLIGYRESNLVKLDIQINGDPVEALSTIVHRD 527
>04_04_1125 + 31085106-31085714
Length = 202
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 219 PSPGSTLSSNPTVPSALWTTPPMT*TDST 305
P P + + PT P WT PP T T T
Sbjct: 46 PPPPTPTPATPTTPPTPWTPPPATPTPPT 74
>10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283
Length = 384
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 159 TWPTPALGTSRVRLKPAWEVPSPGSTLSSNPTVPSALWTTPP 284
T P P ++ L PA PS G+TLSS+ + T P
Sbjct: 299 TLPPPPQKVTKTVLAPATGEPSRGATLSSSAATTCCTFLTSP 340
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 162 WPTPALGTSRVRLKPAWEVPSPGSTLSSNPTVPSAL 269
WP P L + R L P W P+ L P ++L
Sbjct: 248 WPQPHLASRRTELPPRWNGPTGTVVLIDKPKGDASL 283
>04_03_0368 + 15004949-15005659,15005789-15005848
Length = 256
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 144 PASRTTWPTPALGTSRVRLKPAWEVPSPGSTLSSNPTVPSALWTTPPMT*TDST 305
P SR WP SR + P+ P S + P +P+A T P T T +T
Sbjct: 159 PGSRI-WPPAPFLASRPPMPPSLASGKPDSAAGAFPRLPAADATADPATDTFAT 211
>12_02_0023 - 12404617-12405285
Length = 222
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +3
Query: 135 LTTPASRTTWPTPALGTSRVRLKPAWEVPSPGSTLSSNPTVPSALWTTPPMT*TDSTL 308
L T S TW LGT AW +SS+ ++PS + P + T S +
Sbjct: 19 LATHQSWMTWRMAWLGTRSSSQSGAWVTGHTARPVSSHASIPSLSYVIPIVAITRSRI 76
>06_01_0386 -
2767806-2767955,2768150-2768239,2768317-2768373,
2768477-2768533,2768610-2769389
Length = 377
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 144 PASRTTWPTPALGTSRVRLKPAWEVPSPGS 233
PAS TTW +S + P + PSPGS
Sbjct: 83 PASPTTWHDNKAASSPAQRPPQQKQPSPGS 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,998,961
Number of Sequences: 37544
Number of extensions: 343391
Number of successful extensions: 1219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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