Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_K06
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.58 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 194 QVETRVGGTVSGQYSLIEPDGTKRTVDYAADDVNGF 301
           QV+        G  S   PDG + ++ Y AD+ NGF
Sbjct: 62  QVDNETPVVSQGSDSYTAPDGQQVSITYVADE-NGF 96


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 477 AHPTLPYTLAECTAWS 524
           A PT+PYT  E   W+
Sbjct: 226 AIPTVPYTETETETWT 241


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 230 QYSLIEPDGTKRTVDYAADDVNGFNAVV 313
           QY + +P   + TVDY  +    F+ +V
Sbjct: 163 QYDIGKPVVAEETVDYMLEKSGNFSRLV 190


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 126  EQTLTTPASRTTWPTPALGTSRVRLKPAWEVPSPGSTLSSN 248
            E +  T A+  T   P    ++ +LKP     SPG     N
Sbjct: 1102 ETSTVTAAAAATNIRPGTADNKPQLKPQKPFTSPGGIPGPN 1142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,603
Number of Sequences: 438
Number of extensions: 3274
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)