Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_K05
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    27   3.0  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   5.2  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    23   5.8  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   9.1  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   9.1  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 391 YDPDGIRFEDEENALMEVRLREPDECECYKCGDF 492
           YD DGIRF+  ++A +E  LR     + +  G++
Sbjct: 225 YDIDGIRFDAIKHAPIEFWLRMSKAADIFTIGEY 258


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 305 IDGCT*LLHIPSHLFTLTSPLHDLSNLPISSY-SSLVTCTSLPTV 174
           +DG     +IP  LFT   P +    + ++S+ SS   C+ L  V
Sbjct: 590 LDGTYLFSYIPERLFTEKKPKNASKEIAVTSFLSSHAACSKLSNV 634


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 23.4 bits (48), Expect(2) = 5.8
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 472 CYKCGDFSR*N*HCTSSIAPHSTSKI 549
           CY CG +      CT  +  +S  KI
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKI 143



 Score = 20.6 bits (41), Expect(2) = 5.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 469 ECYKCG 486
           ECYKCG
Sbjct: 84  ECYKCG 89


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 259 VNKCEGMCNSQVHPSISSPTGFQKECFCCREKFLRERLVTLTHCYDPDGIRFEDEENALM 438
           VN+ +  C S+V  S +  T  +    C    FL  RL+ + +  +P   +F +E+  L 
Sbjct: 96  VNRIKSRCGSKVLKSTTKFTIPKTAAKCLCNTFLNARLLQIVN--NPSARKFSNEKCLLQ 153

Query: 439 EVR 447
             R
Sbjct: 154 LTR 156


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 173 KQSEAKCMLLKRNTTKWVDYLDHAVV 250
           +++  + + L+   TKW+DYL   V+
Sbjct: 614 EKNPTRIVALENGNTKWMDYLPRPVI 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,915
Number of Sequences: 5004
Number of extensions: 42934
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)