Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_K02
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    75   1e-15
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    75   1e-15
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 74.5 bits (175), Expect = 1e-15
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
 Frame = +2

Query: 410 PLDRAKINFQTSQIPYS------WRAAVRFLVQSARSEGAAALWRGNSATMARIVPYAAI 571
           P++R K+  Q   I         ++  +   V+  + +G  + WRGN A + R  P  A+
Sbjct: 30  PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89

Query: 572 QFTAHEQWKRAL--AVDTPHTAQQHPIKHLIAGSLAGVTSQSATYPLDLARARMAVT--- 736
            F   +++K+     VD      ++ + +L +G  AG TS    YPLD AR R+A     
Sbjct: 90  NFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 149

Query: 737 --NATEYRTLRAVFVKVVREEGFRRLYRGYPATVLGVIPYAGVSFFTYXT 880
                E+  L     K+ + +G   LYRG+  +V G+I Y    F  Y T
Sbjct: 150 AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDT 199


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 74.5 bits (175), Expect = 1e-15
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
 Frame = +2

Query: 410 PLDRAKINFQTSQIPYS------WRAAVRFLVQSARSEGAAALWRGNSATMARIVPYAAI 571
           P++R K+  Q   I         ++  +   V+  + +G  + WRGN A + R  P  A+
Sbjct: 30  PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89

Query: 572 QFTAHEQWKRAL--AVDTPHTAQQHPIKHLIAGSLAGVTSQSATYPLDLARARMAVT--- 736
            F   +++K+     VD      ++ + +L +G  AG TS    YPLD AR R+A     
Sbjct: 90  NFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 149

Query: 737 --NATEYRTLRAVFVKVVREEGFRRLYRGYPATVLGVIPYAGVSFFTYXT 880
                E+  L     K+ + +G   LYRG+  +V G+I Y    F  Y T
Sbjct: 150 AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDT 199


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 766  GPQGSVLGGVGDRHARP 716
            G QG+V+ G GDR  RP
Sbjct: 1866 GNQGNVVPGNGDRSDRP 1882


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 766  GPQGSVLGGVGDRHARP 716
            G QG+V+ G GDR  RP
Sbjct: 1862 GNQGNVVPGNGDRSDRP 1878


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,014
Number of Sequences: 438
Number of extensions: 3692
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)