Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J24
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     27   2.1  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   2.8  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    26   6.4  

>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 215 ILFNTQRWLFWERHRKGGYDTTIKTSNWEHLKN 313
           I F T  +L WE  RK      +  S W HL N
Sbjct: 131 IEFETADFLRWESKRKFKIILALSVSKWVHLNN 163


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -3

Query: 572 RPLVLSCQDNRERELVQLDS--FPGHKNCNL 486
           +P +LSC  N  +EL++L++  +   KNC L
Sbjct: 264 KPHLLSCLKNTHQELIKLETEVYNATKNCTL 294


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 305 NVPNSTF*SLYRSLLFYVFPKIAI 234
           N+P +T   +YR + FY+F  + I
Sbjct: 271 NIPKATSRFIYRLIFFYIFGSLTI 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,074
Number of Sequences: 5004
Number of extensions: 48646
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)