Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J24
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0569 + 30313337-30313650,30314271-30314353,30314763-303148...    54   9e-08
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472...    31   0.95 
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011...    30   2.2  
02_01_0299 + 2001938-2002510,2002821-2003033,2003129-2003333,200...    29   3.9  
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    28   6.7  

>01_06_0569 +
           30313337-30313650,30314271-30314353,30314763-30314876,
           30315876-30315938,30316289-30316380,30316464-30316544,
           30316629-30316727,30316795-30316933,30317017-30317165
          Length = 377

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
 Frame = +2

Query: 428 FNSPTVLEKFVTTCDSDHGEGYSSCALEMSPAGRA-------LFHGYLDTRVPKDG--RI 580
           FNS   L+++    DS++G G SS +LE++  G         LF G L   + +    +I
Sbjct: 152 FNSKDELKRWHLYSDSEYG-GLSSASLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKI 210

Query: 581 KKAGYCAMRSKMQRKSFKRASTFDWHLYNTLVXKVRGDGRAYLLNISTEGY 733
           +++G+C MRSK      K     D   Y+T+  K+RGDGR Y+  I TE +
Sbjct: 211 RRSGFCGMRSK------KFNGFIDLDAYDTIAMKLRGDGRCYISTIYTENW 255


>06_03_1312 -
           29246828-29246899,29247011-29247058,29247138-29247215,
           29247304-29247360,29247597-29247662,29247750-29247839,
           29248136-29248213,29248318-29248422,29248534-29248669,
           29248778-29248853,29248973-29249177,29249289-29249501,
           29250073-29250795
          Length = 648

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 27/90 (30%), Positives = 44/90 (48%)
 Frame = +2

Query: 455 FVTTCDSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAGYCAMRSKMQRKSFK 634
           F  T  S   EG  + + + S AG+A+F G++ TR          GY  +  ++   S  
Sbjct: 353 FPNTFASRFDEGIDA-SFDFSEAGQAVFSGFVFTR---------GGYVEISKRL---SLP 399

Query: 635 RASTFDWHLYNTLVXKVRGDGRAYLLNIST 724
             ST D   Y+ L+  V G+GR+Y++ + T
Sbjct: 400 LGSTLD--RYDGLLFSVGGNGRSYVVILET 427


>06_03_1490 +
           30497980-30498102,30499034-30500156,30500914-30501132,
           30501228-30501454,30501810-30501884,30502250-30502321,
           30502765-30502863,30502975-30503046,30503131-30503245,
           30503455-30503523,30503625-30503952,30504320-30504437,
           30504522-30505448
          Length = 1188

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 569 DGRIKKAGYCAMRSKMQRKSFKRASTFDWHLYNTLVXKVRGDG 697
           D R KK G  A +  M   +F+        +YN +V   +GDG
Sbjct: 622 DERCKKVGDVASKLSMDEATFREIQEKKLEIYNAIVKLQKGDG 664


>02_01_0299 +
           2001938-2002510,2002821-2003033,2003129-2003333,
           2003485-2003560,2003665-2003800,2003905-2004009,
           2004095-2004172,2004264-2004353,2004441-2004506,
           2004836-2004892,2004996-2005073,2005165-2005212,
           2005330-2005401
          Length = 598

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = +2

Query: 494 SSCALEMSPAGRALFHGYLDTRVPKDGRIKKAGYCAMRSKMQRKSFKRASTFDWHLYNTL 673
           +  + E+S  G+A+F G++ TR          GY  +  ++   S    ST D   Y+ L
Sbjct: 315 TDASFEISENGQAVFSGFVFTR---------GGYVEVSKRL---SLPLGSTLD--RYDGL 360

Query: 674 VXKVRGDGRAYLLNIST 724
           +  V G+GR+Y++ + T
Sbjct: 361 LLSVGGNGRSYVIILET 377


>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +3

Query: 189 RVIILKSVLYYLILNDGYFGKDIEKEATIQRLKRRIGNI 305
           R++++  V ++LIL+ GY   ++    T+Q+LK  I +I
Sbjct: 647 RIVLIVWVFFFLILSSGYTA-NLATMLTVQQLKPTINSI 684


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,216,585
Number of Sequences: 37544
Number of extensions: 298960
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)