Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_J24
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77654-3|CAB01129.1| 340|Caenorhabditis elegans Hypothetical pr... 81 1e-15
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 30 2.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 30 2.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 30 2.0
AC006695-7|AAM48553.1| 724|Caenorhabditis elegans Titin family ... 30 2.0
AC006695-6|AAU45229.1| 703|Caenorhabditis elegans Titin family ... 30 2.0
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 30 2.0
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 30 2.0
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 30 2.0
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 30 2.0
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 30 2.0
>Z77654-3|CAB01129.1| 340|Caenorhabditis elegans Hypothetical
protein C50B8.3 protein.
Length = 340
Score = 80.6 bits (190), Expect = 1e-15
Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Frame = +2
Query: 377 MDPLLIARPGEIDLLWCFNSPTVLEKFVTTCDSDHGEGYSSCALEMSPAGRALFHGYLDT 556
++ + R E + + F++ L+ + CDSD EG+S+C+L S G A+F G + T
Sbjct: 122 LEDIGFVRHNEARVDYRFDTQEKLDLWKIGCDSDWKEGFSTCSLVNSDRGTAVFSGNIST 181
Query: 557 RVPKDGRIKKAGYCAMRSKMQRKSFKRASTFD-WHLYNTLVXKVRGDGRAY 706
+V KDGR+++AG+ +M+ + RK+F R W ++ L+ KVRGDGR+Y
Sbjct: 182 KVLKDGRVERAGWASMKLE-DRKAFNRKKFLSKWRNFSHLLLKVRGDGRSY 231
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 434 SPTVLEKFVTTC--DSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAG 592
+PT L+ V TC +S+HG SSC +E++ + + + + +K+ G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 434 SPTVLEKFVTTC--DSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAG 592
+PT L+ V TC +S+HG SSC +E++ + + + + +K+ G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 434 SPTVLEKFVTTC--DSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAG 592
+PT L+ V TC +S+HG SSC +E++ + + + + +K+ G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AC006695-7|AAM48553.1| 724|Caenorhabditis elegans Titin family
protein 1, isoform a protein.
Length = 724
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 434 SPTVLEKFVTTC--DSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAG 592
+PT L+ V TC +S+HG SSC +E++ + + + + +K+ G
Sbjct: 602 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 656
>AC006695-6|AAU45229.1| 703|Caenorhabditis elegans Titin family
protein 1, isoform b protein.
Length = 703
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 434 SPTVLEKFVTTC--DSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAG 592
+PT L+ V TC +S+HG SSC +E++ + + + + +K+ G
Sbjct: 581 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 635
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 434 SPTVLEKFVTTC--DSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAG 592
+PT L+ V TC +S+HG SSC +E++ + + + + +K+ G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 434 SPTVLEKFVTTC--DSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAG 592
+PT L+ V TC +S+HG SSC +E++ + + + + +K+ G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 434 SPTVLEKFVTTC--DSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAG 592
+PT L+ V TC +S+HG SSC +E++ + + + + +K+ G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 434 SPTVLEKFVTTC--DSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAG 592
+PT L+ V TC +S+HG SSC +E++ + + + + +K+ G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 434 SPTVLEKFVTTC--DSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAG 592
+PT L+ V TC +S+HG SSC +E++ + + + + +K+ G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,430,109
Number of Sequences: 27780
Number of extensions: 273243
Number of successful extensions: 647
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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