Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J24
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.42 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 171 KTEKLLRYLTLVITXGLSNDIFNLDXSTEG 82
           K  +LL+YL  V   GLS D F  D + +G
Sbjct: 507 KGTELLKYLRKVDFEGLSGDKFKFDKNGDG 536


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 536 FHGYLDTRVPKDGRIKKAG 592
           F   LDT VP  G + KAG
Sbjct: 15  FSATLDTVVPNSGELFKAG 33


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 559 SRVKITVKESSSSWTHFQ 506
           SR+K T K S+   THFQ
Sbjct: 675 SRIKTTEKLSTDPNTHFQ 692


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 553 HESTKGRSHQKSRVLRYEIENAKE 624
           H+S   R H K+   R E+E  +E
Sbjct: 51  HKSIYHRQHSKNEQQRKEMEQMRE 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,808
Number of Sequences: 438
Number of extensions: 3365
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)