Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_J23
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0619 + 26652923-26653267,26653440-26654273 58 1e-08
01_01_1152 + 9170628-9171899 56 4e-08
11_01_0771 + 6453130-6454488 47 2e-05
11_01_0767 + 6438648-6438809,6439146-6440000 46 3e-05
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 44 2e-04
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 39 0.004
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 31 1.5
03_05_0294 + 22855503-22855946,22856346-22856399 30 2.5
08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099 29 3.4
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 29 4.4
05_06_0044 - 25150322-25151260 29 5.9
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 29 5.9
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 57.6 bits (133), Expect = 1e-08
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Frame = +1
Query: 190 VISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSL 369
+ SP G+ + +A G G + RQL AF+ ++ I + + +L + L
Sbjct: 23 MFSPLGLRAGLALLATGTDGETLRQLL-AFLGSQH----IHQLNAASAGLLAEMRAWPQL 77
Query: 370 VSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIA--NTYIEKS-GGRVSN 540
+F+D L P F++T GA + +DF + +A A N +I ++ GR++N
Sbjct: 78 SFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNN 137
Query: 541 VLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTELEPFYNED 666
+ F S + +L N + FK WG F DT+ F+ +D
Sbjct: 138 TISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQD 180
>01_01_1152 + 9170628-9171899
Length = 423
Score = 55.6 bits (128), Expect = 4e-08
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 6/202 (2%)
Frame = +1
Query: 190 VISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSL 369
++SP + +A GA G + R+L P +L E ++S T ++ + + +
Sbjct: 62 IVSPLSFHAALALVADGARGETQRELLGFLGSP----SLAELHRSPTTRLVARLRHLPNT 117
Query: 370 VSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFS-DPNSARI-ANTYI-EKSGGRVSN 540
V++D L P F + A + DF+ P AR N ++ + + G + +
Sbjct: 118 SFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIRD 177
Query: 541 VLRSDDFQESRLI-LTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYXKGQFP 717
VL + S ++ L N + FKG W LPF+ S T PF+ D G+V + + P
Sbjct: 178 VLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDG---GAVRAPFMTTEIP 234
Query: 718 FS-NLKKLKAF-VLELPYGTDG 777
F ++ F L+LPY G
Sbjct: 235 FERHVAAFPGFTALKLPYKNVG 256
>11_01_0771 + 6453130-6454488
Length = 452
Score = 47.2 bits (107), Expect = 2e-05
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1
Query: 565 ESRLILTNVISFKGLWGLPFNKSDTELEPFYNED 666
E+ ++L N I FKG W PFN+SDTE +PFY D
Sbjct: 201 ETAVVLGNAIYFKGKWDRPFNESDTERKPFYRHD 234
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 46.4 bits (105), Expect = 3e-05
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Frame = +1
Query: 334 VVLDQTANGVSLVSRNF-VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSD-PNSARIA-N 504
V+ DQ G VS +LD ++L PA+R + + + +DF + P AR N
Sbjct: 4 VLADQAPTGGPCVSFACGSWLDASYSLKPAYRDAIVGTYKGAASTVDFKNHPVEARKEIN 63
Query: 505 TYIEKSGGR-VSNVLRSDDFQ-ESRLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLVI 678
++ ++ ++ V++ + ++R ++ N I FKG W PF+KSDT F D +
Sbjct: 64 AWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAEREFRRLDGSSV 123
Query: 679 GSVNMMYXKGQFPFSNLKKLKAF-VLELPY-GTDGKYSM 789
M G + ++ F VL LPY T Y++
Sbjct: 124 EVPFMQRPSGS--YHHVACHDGFRVLRLPYKATSDTYNL 160
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 43.6 bits (98), Expect = 2e-04
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Frame = +1
Query: 502 NTYIEK-SGGRVSNVLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLV 675
N+++EK + G + +L + RL+L N + FKG W F+ S T+ F+ D
Sbjct: 218 NSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFHLLDGKS 277
Query: 676 IGSVNMMYXKGQF--PFSNLKKLKAFVLELPY---GTDGKYSMLVILP 804
+ + M K Q+ + NLK VL+LPY G ++SM ++LP
Sbjct: 278 VQAPFMSTSKKQYILSYDNLK-----VLKLPYQQGGDKRQFSMYILLP 320
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 39.1 bits (87), Expect = 0.004
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Frame = +1
Query: 502 NTYIEK-SGGRVSNVLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLV 675
N+++++ + G + +L + RL+L N + FKG W F+ S T+ F D
Sbjct: 10 NSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFRLLDGKS 69
Query: 676 IGSVNMMYXKGQFPFSNLKKLKAFVLELPY--GTD-GKYSMLVILP 804
+ + M K Q+ S+ LK VL+LPY G D ++SM ++LP
Sbjct: 70 VLAPFMSTSKKQY-LSSYDSLK--VLKLPYQKGRDLRQFSMYILLP 112
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 234 SDSRHQSPYPKRRDHNVPISLSL 166
SDSR Q P+P RDHN +S S+
Sbjct: 584 SDSRGQGPHPNFRDHNGGVSSSI 606
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Frame = +1
Query: 184 HVVISPFGIWTLMTGIALGASGNSYRQLSRAFILP-KNPATLIEGY-KSLTDVVLDQT-- 351
+V SP + ++ +A GA G + QL +P + A + + + + +VL +
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 352 ANGVSLVSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDF 474
A G + + VF+D+ +L+ +F+ + A +DF
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099
Length = 453
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 435 ERRPEGRQQGEIVVQEDKVPTDQGYSVRGLIEHHVRQGFVPFDQRCRIF-GQNKRSAQLP 259
ER PEG G +VV ED+ +Q ++ + H R +PF Q R++ G++ +P
Sbjct: 19 ERPPEGPGSGFLVV-EDEAAVEQAATICCGLCHDPRVRTLPFTQSWRLYMGEDNVVVFVP 77
Query: 258 V 256
V
Sbjct: 78 V 78
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 461 LIEAPKSFWSVVLKAGNKVKSLSKKTKFRL-TRDTPFAV*SSTTSVRDLYPSI 306
++E S SV + G+ +K + ++TKFRL + D P+ S SV +P++
Sbjct: 319 VVEVGVSTSSVPITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTS-FPNV 370
>05_06_0044 - 25150322-25151260
Length = 312
Score = 28.7 bits (61), Expect = 5.9
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 14/145 (9%)
Frame = +1
Query: 385 VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIANTYIEKSGGRVSNVLRS--DD 558
V++D L PAF T F A+++ A I + ++GG V ++L + DD
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRSAGNPAAARAEINEWFSSQTGGFVKDILSNSIDD 62
Query: 559 FQE----------SRLILTNVISFKGLWGLPFNKSDTELEPFY-NEDRLVIGSVNMMYXK 705
+ + + L N + F W PF TE F+ + D V V M
Sbjct: 63 DDDGSGGGGGAISASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDV--RVPFMAGS 120
Query: 706 GQFPFSNLKKLKAF-VLELPYGTDG 777
Q F ++ F VL + Y T G
Sbjct: 121 HQHAFMDVGCHPGFNVLRMMYRTGG 145
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 333 VRQGFVPFDQRCRIFGQNKRSAQLPVAITGRS*SDSR 223
+RQG +PF Q F K S +P A+T + ++ R
Sbjct: 878 IRQGILPFAQLSLSFNDIKYSVDMPEAMTAQGVTEER 914
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,123,307
Number of Sequences: 37544
Number of extensions: 472633
Number of successful extensions: 1228
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -