Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J19
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   3.1  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    25   5.4  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   7.1  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 264 IDHVTAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAI 151
           I  +  +C++ L  + MF   GSD+Y      + + AI
Sbjct: 706 ITQIYLNCSLDLRDSWMFHENGSDTYRSAQLQETFLAI 743


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 22  MQYX*N*KII-VSSKLVNRKMFRLPFGERVDPMEEKR 129
           +Q+  N K++ V S++   K+FR   G+   P  EKR
Sbjct: 47  LQHVYNLKVVSVKSRIYQGKLFRNQLGQVKRPQSEKR 83


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +1

Query: 94  FGERVDPMEEKRQARENTINSVITF---GIMCAIIRI 195
           F E VD +   RQA+ N  NS++++    ++ AI+ +
Sbjct: 110 FRENVDVLYNLRQAQSNYKNSILSYKKGSVLSAILAV 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,237,969
Number of Sequences: 5004
Number of extensions: 21586
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)