Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J18
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0107 + 12412772-12413097,12413460-12413732,12414163-12414247     30   2.4  
09_03_0105 + 12400722-12401041,12401427-12401699,12401788-12401827     30   2.4  
02_05_0059 - 25482207-25482271,25482432-25482651                       29   3.1  
07_03_0366 + 17321948-17322331                                         29   4.1  
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    29   4.1  
02_05_1309 + 35627549-35627679,35628377-35629361                       29   5.4  
01_01_0073 + 555485-556315                                             28   7.2  
06_03_1326 - 29355467-29355817                                         28   9.5  
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623     28   9.5  

>09_03_0107 + 12412772-12413097,12413460-12413732,12414163-12414247
          Length = 227

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 768 DGRXGAVFHGGSDGRVAQSRGSRV 697
           DGR    + GGSDGR+ + RG R+
Sbjct: 74  DGRGDGPYTGGSDGRILRWRGGRL 97


>09_03_0105 + 12400722-12401041,12401427-12401699,12401788-12401827
          Length = 210

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 768 DGRXGAVFHGGSDGRVAQSRGSRV 697
           DGR    + GGSDGR+ + RG R+
Sbjct: 72  DGRGDGPYTGGSDGRILRWRGGRL 95


>02_05_0059 - 25482207-25482271,25482432-25482651
          Length = 94

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 768 DGRXGAVFHGGSDGRVAQSR---GSRVAHGGGSTVFHSGCNGG 649
           DG  G++  GG  G +A+     GS    GGG +V   G NGG
Sbjct: 30  DGGGGSMKGGGDSGSLARGGDGGGSTWGGGGGGSVGRGGNNGG 72


>07_03_0366 + 17321948-17322331
          Length = 127

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 744 HGGSDGRVAQSRGSRVAHGGGSTVFHSGCNGGVAQSRGSR 625
           HGG   R  Q RG R   GGG+     G  GGV +   +R
Sbjct: 43  HGGGGRRRRQRRGRRRGSGGGAMEAEGG--GGVTEPSATR 80


>03_05_0967 +
           29265465-29266214,29267718-29267944,29268428-29268557,
           29268651-29268719,29268803-29268946,29269775-29270011,
           29270897-29270998,29271131-29271396,29271766-29273410,
           29274449-29275018
          Length = 1379

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 765 GRXGAVFHGGSDGRVAQSRGSRVAHGGGSTVFH 667
           G  G    GG  G+ A + G R+ + GG   FH
Sbjct: 210 GAEGERKEGGEPGKAAAAPGGRIGYSGGGQGFH 242


>02_05_1309 + 35627549-35627679,35628377-35629361
          Length = 371

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = -3

Query: 765 GRXGAVFHGGSDGRVAQSRGSRVAH-GGGSTVFHSGCNGG 649
           G   A   GG    VA   G  VA  GGG    H GC GG
Sbjct: 62  GASWAAGEGGEKVEVALRHGEVVADPGGGRLPRHGGCGGG 101


>01_01_0073 + 555485-556315
          Length = 276

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -3

Query: 768 DGRXGAVFHG-GSDGRVAQSRGSRVAHGGGSTVFHSGCNGGV-AQSRG 631
           DG  G    G G  G VA    +    GGG     SGC GGV A+ RG
Sbjct: 179 DGVGGGDATGTGGGGTVAGGGTATGGAGGGEGGGESGCGGGVAAEGRG 226


>06_03_1326 - 29355467-29355817
          Length = 116

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 765 GRXGAVFHGGSDGRVAQSRGSRVAHGGGSTVFHSGCNGGVAQSRG 631
           GR G    GG  G      G    +GGG +  H+G  GG  +S G
Sbjct: 33  GRSGG--GGGGGGGKGGGEGGSGKYGGGYSGGHAGGGGGAGKSGG 75


>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
          Length = 400

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = -3

Query: 765 GRXGAVFHGGSDGRVAQSRGSRVAHGGGSTVFHSGCNGGVAQSRG 631
           GR GA   GG  G  A + G+R   G G    H G   G    RG
Sbjct: 264 GRGGAGAGGGHGGAGAGAGGARGGAGAGGG--HGGAGAGAGGGRG 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,315,690
Number of Sequences: 37544
Number of extensions: 96496
Number of successful extensions: 765
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)