Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J17
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    27   2.2  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    27   3.9  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.1  

>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
 Frame = -3

Query: 503 KSNMYLTT*LFSIILAG*SI----NQDIAQLIGCSPLIXPGFLAF*NIVNYLS-YFSIIW 339
           ++N Y +   +SIIL   S+       I Q++     + P    F N +N LS  + I+ 
Sbjct: 273 ETNPYFSRLYYSIILTFVSVIAAFTIGIIQMLMLIISVHPMESTFWNGLNRLSDNYEIVG 332

Query: 338 QCHCFELRVNQLI---IHNYFKRPLTSPFTQNQSR 243
            C C    +  L    +HNYFK+  T P      R
Sbjct: 333 GCICGAFVLAGLFGISMHNYFKKKFTPPVQVGNDR 367


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 509 FQKSNMYLTT*LFSIILAG*SINQDIA 429
           FQK  +YL   LF II++G + NQ  A
Sbjct: 193 FQKYGLYLIPILFLIIMSGNNANQQAA 219


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = -3

Query: 302 IIHNYFKRPLTSPFTQNQSRRCIISNNLRQG*AMTSIITSTTVFYMYFRDETFFFIPS 129
           ++H + +  L  PF     R  I+ NN R+   +T +++   ++ ++F    F+ + S
Sbjct: 322 VVHFFIRDSLEVPFIWQHRRDYIVHNN-RERNTITPLLSQNDLWNIFFLCTKFWSLHS 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,633
Number of Sequences: 5004
Number of extensions: 61299
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)