Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J17
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1247 + 35233756-35233785,35234902-35236107                       30   1.8  
01_06_1235 - 35602548-35602594,35603057-35603060,35603186-356032...    28   7.2  

>02_05_1247 + 35233756-35233785,35234902-35236107
          Length = 411

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -3

Query: 395 GFLAF*NIVNYLSYFSIIWQCHCFELRVNQLIIHNYFKRPLTSPFTQNQSRRCIISNNLR 216
           GFL+F N  +  + FS +  C C  +  + L+ H      L SPF       C IS+ ++
Sbjct: 12  GFLSFLNFFHNSTAFSNLIGC-CLFILPSYLVGHYIEHHHLVSPFIPENQYICCISSIIK 70

Query: 215 QG 210
            G
Sbjct: 71  PG 72


>01_06_1235 -
           35602548-35602594,35603057-35603060,35603186-35603290,
           35604274-35604589,35605898-35605968,35606076-35606270
          Length = 245

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 276 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVV 368
           G+FEV  N +L++SKL     P   E+ +++
Sbjct: 184 GAFEVYCNGQLVFSKLSEQRFPSEFELRELI 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,102,447
Number of Sequences: 37544
Number of extensions: 341256
Number of successful extensions: 641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)