Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J15
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P48935 Cluster: Succinate dehydrogenase cytochrome b560...    36   1.4  
UniRef50_A0D8A8 Cluster: Chromosome undetermined scaffold_40, wh...    33   7.6  

>UniRef50_P48935 Cluster: Succinate dehydrogenase cytochrome b560
           subunit; n=1; Cyanidium caldarium|Rep: Succinate
           dehydrogenase cytochrome b560 subunit - Cyanidium
           caldarium
          Length = 132

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 21/58 (36%), Positives = 25/58 (43%)
 Frame = -2

Query: 595 YITFFSFVFLLLFNRFFCVFSTWGCFKGPGTVFQFIRCIFNTFIRVEVDFTNLF*HFF 422
           Y+ FF FV        FC  + W  +K   T F FI   F  FI       +LF HFF
Sbjct: 33  YLVFFLFVLFCSIKFLFCFSTFWFVYKFVKTCFFFILSFFIVFI--VFSMYSLFYHFF 88


>UniRef50_A0D8A8 Cluster: Chromosome undetermined scaffold_40, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_40, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2015

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 266  TNHEELHAYWSTWTFFTKFTVRTLIKIYVSCGIISLHC 153
            T H+E  A+ ST T  TK+   T  +I   C I+S++C
Sbjct: 1278 TTHDECQAFDSTCTLQTKYNSDTSTQINSGCQILSINC 1315


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,073,645
Number of Sequences: 1657284
Number of extensions: 12825149
Number of successful extensions: 30020
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30006
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)