Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J15
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   5.0  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   6.7  

>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 632 NALLKFECANELPKLLKPNDFIFDDVNNTESNIL 733
           N+   FE    L K +   DF+FDD     SN++
Sbjct: 655 NSYKFFEAQAALYKKVTGKDFVFDDAATLSSNVM 688


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 449 VNLHSDECVENAPDELKDSPRTFEATPCAENTEK 550
           ++LH D   EN+P  +  S   +E      NTE+
Sbjct: 595 IHLHYDAAQENSPQPVNGSSPPYELVFVTRNTEE 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,225
Number of Sequences: 5004
Number of extensions: 57081
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)