Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J11
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       56   2e-08
05_03_0661 - 16726958-16726966,16727133-16727234                       54   3e-08
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14...    27   6.0  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 26/59 (44%), Positives = 37/59 (62%)
 Frame = +1

Query: 61  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLVHGSKIFKESKVLQEG*PEASQATRE 237
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST     K  +  +  ++   ++ +A  E
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSGEAESE 59


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +1

Query: 61  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 156
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTST 32


>01_01_0020 +
           147147-147313,148450-148548,148634-148742,148856-148927,
           149056-149061,150811-150915,151048-151539,151629-152025,
           152178-153646,154010-154450,154543-155214
          Length = 1342

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 5   RPMLLFCP--LXSKWIENASKWQSQRIIQIITKTAKLTEMVSK 127
           +P ++ CP  L  +W   AS+W  +  ++I+  +A  +   SK
Sbjct: 576 KPSIVVCPVTLLQQWRREASRWYPKFKVEILHDSANSSSKKSK 618


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,989,544
Number of Sequences: 37544
Number of extensions: 140323
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)