Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J11
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    29   0.028
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   9.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     20   9.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 28.7 bits (61), Expect = 0.028
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 67  KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLVHGSK 174
           +  NH NHN N+  H +        +H     H SK
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSK 455


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 318 YFLCVYLLITNVHF 277
           + +CV +++ NVHF
Sbjct: 316 FSICVTVVVLNVHF 329


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 312 LCVYLLITNVHF 277
           +CV +++ NVHF
Sbjct: 322 ICVTVVVLNVHF 333


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 312 LCVYLLITNVHF 277
           +CV +++ NVHF
Sbjct: 322 ICVTVVVLNVHF 333


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 175 FWIHAQGWIRAWSSL 131
           +W H  GW+   SS+
Sbjct: 526 WWSHVLGWLCGLSSM 540


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 175 FWIHAQGWIRAWSSL 131
           +W H  GW+   SS+
Sbjct: 579 WWSHVLGWLCGLSSM 593


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 139 TRHESTLVHGSKIFKESKVLQE 204
           T H        ++ KE+K++QE
Sbjct: 427 TEHSQLTNISEEVLKEAKIIQE 448


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 139 TRHESTLVHGSKIFKESKVLQE 204
           T H        ++ KE+K++QE
Sbjct: 133 TEHSQLTNISEEVLKEAKIIQE 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,505
Number of Sequences: 438
Number of extensions: 1624
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)