Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J06
         (531 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.10 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.55 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.55 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   5.1  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   5.1  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   5.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 440 HRNVLLCLKFQGFFFKSVQKNSQLKKTILNTC 345
           H N L C   +GFF +S+ KN+  +    N C
Sbjct: 199 HYNALTCEGCKGFFRRSITKNAVYQCKYGNNC 230


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 440 HRNVLLCLKFQGFFFKSVQKNSQ 372
           H N+  C    GFF +S+++N Q
Sbjct: 49  HYNIFACDGCAGFFKRSIRRNRQ 71


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 440 HRNVLLCLKFQGFFFKSVQKNSQ 372
           H N+  C    GFF +S+++N Q
Sbjct: 49  HYNIFACDGCAGFFKRSIRRNRQ 71


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 301 YYTAIKRVYNIMYL*QVLRMVFLS 372
           Y+  I++ YNI+Y  ++  MV+L+
Sbjct: 322 YHLEIEKYYNILYFCRI--MVYLN 343


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 433 MFCCASNFRVF 401
           ++CC +NF VF
Sbjct: 160 VYCCDNNFNVF 170



 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 442 FIGMFCCASNFRVFFLNQYKKTVNSRRPFLILV 344
           F+ +  C S  +++   +Y+K     + F+I +
Sbjct: 16  FLFLLICDSYLKIYHKEKYRKFCRILKYFIIAI 48


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 247 LIHITMKQLVFLNVTVRY 194
           ++ +++K +VF+N  V+Y
Sbjct: 4   ILKLSLKDIVFINPLVKY 21



 Score = 21.0 bits (42), Expect = 6.8
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -2

Query: 455 YFKCIHRNVL-LCLKFQGFFFKSVQKNSQLKKTILNTC 345
           YF  + + V+ LC    G       + +   KT LN+C
Sbjct: 138 YFWFVLKQVMFLCYSTYGIQVFGTMQRTSFFKTFLNSC 175


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 168  NKHIGYTANAFFP 130
            N+  G+TA  FFP
Sbjct: 966  NERAGFTAAGFFP 978


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,481
Number of Sequences: 336
Number of extensions: 2004
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)