Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J06
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266     39   0.002
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846...    38   0.005

>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
          Length = 272

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 14/50 (28%), Positives = 32/50 (64%)
 Frame = +2

Query: 50  LRLVISMIGFIWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLVVS 199
           L++++  +   W+++AA  F+  +    +KALA+YP+ L Y  + +L+++
Sbjct: 221 LKIIVVTVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYISVGFLIIA 270


>05_04_0443 -
           21283680-21283940,21284044-21284118,21284620-21284649,
           21286744-21287247
          Length = 289

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 14/50 (28%), Positives = 32/50 (64%)
 Frame = +2

Query: 50  LRLVISMIGFIWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLVVS 199
           L+++  ++   W+++AA  F+  +    +KALA+YP+ L Y  + +L+++
Sbjct: 238 LKIIAVVVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIA 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,204,045
Number of Sequences: 37544
Number of extensions: 166106
Number of successful extensions: 250
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)