Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_J06
(531 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81137-10|CAB03470.2| 232|Caenorhabditis elegans Hypothetical p... 75 4e-14
AL117207-21|CAN99696.1| 255|Caenorhabditis elegans Hypothetical... 34 0.055
AL117207-20|CAB60403.3| 228|Caenorhabditis elegans Hypothetical... 34 0.055
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 29 2.1
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 29 2.1
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 29 2.1
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 29 2.1
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 29 2.1
AL032626-9|CAA21529.1| 180|Caenorhabditis elegans Hypothetical ... 28 4.8
Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical pr... 27 6.3
AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical ... 27 6.3
>Z81137-10|CAB03470.2| 232|Caenorhabditis elegans Hypothetical
protein W02D9.2 protein.
Length = 232
Score = 74.5 bits (175), Expect = 4e-14
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = +2
Query: 44 FFLRLVISMIGFIWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLVVSHS 205
F LRL+I+ IGF+W+T+A+ FL QP+ K+ L +YP+ LFYF++SW+++SHS
Sbjct: 179 FPLRLLITSIGFVWSTYASMGFLAGCQPDKKRLLVIYPVFLFYFVVSWMIISHS 232
>AL117207-21|CAN99696.1| 255|Caenorhabditis elegans Hypothetical
protein Y60A3A.19b protein.
Length = 255
Score = 34.3 bits (75), Expect = 0.055
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 8 PIILFSTQNTFLFFLRLV---ISMIGFIWATFAATKFLGDSQPEGKKALAVYPICLFY 172
P+++ S RL+ + M G IW+ ++A L + + KK L VYP+ L Y
Sbjct: 188 PLVVTSLITPLFSSFRLLSNGLGMFGTIWSVYSAGTLLCVDELQAKKPLVVYPVFLLY 245
>AL117207-20|CAB60403.3| 228|Caenorhabditis elegans Hypothetical
protein Y60A3A.19a protein.
Length = 228
Score = 34.3 bits (75), Expect = 0.055
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 8 PIILFSTQNTFLFFLRLV---ISMIGFIWATFAATKFLGDSQPEGKKALAVYPICLFY 172
P+++ S RL+ + M G IW+ ++A L + + KK L VYP+ L Y
Sbjct: 161 PLVVTSLITPLFSSFRLLSNGLGMFGTIWSVYSAGTLLCVDELQAKKPLVVYPVFLLY 218
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 446 CIHRNVLLCLKFQGFFFKSVQKNSQLKKTILNTC 345
C+H C +GFF ++VQKNS+ TC
Sbjct: 277 CLHYGARTCEGCKGFFKRTVQKNSKYTCAGNKTC 310
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 446 CIHRNVLLCLKFQGFFFKSVQKNSQLKKTILNTC 345
C+H C +GFF ++VQKNS+ TC
Sbjct: 121 CLHYGARTCEGCKGFFKRTVQKNSKYTCAGNKTC 154
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 446 CIHRNVLLCLKFQGFFFKSVQKNSQLKKTILNTC 345
C+H C +GFF ++VQKNS+ TC
Sbjct: 277 CLHYGARTCEGCKGFFKRTVQKNSKYTCAGNKTC 310
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 446 CIHRNVLLCLKFQGFFFKSVQKNSQLKKTILNTC 345
C+H C +GFF ++VQKNS+ TC
Sbjct: 127 CLHYGARTCEGCKGFFKRTVQKNSKYTCAGNKTC 160
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 446 CIHRNVLLCLKFQGFFFKSVQKNSQLKKTILNTC 345
C+H C +GFF ++VQKNS+ TC
Sbjct: 277 CLHYGARTCEGCKGFFKRTVQKNSKYTCAGNKTC 310
>AL032626-9|CAA21529.1| 180|Caenorhabditis elegans Hypothetical
protein Y37D8A.10 protein.
Length = 180
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 26 TQNTFLFFLRLVISMIGFIWATFAATKFLGDSQPEGKKALAVYPICLF 169
T++ L LRL+IS IG ++ FA + P+ K LAV + F
Sbjct: 36 TESHNLMNLRLLISFIGVAFSAFACGYDYYEPFPKSKIVLAVCSVSYF 83
>Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 434 NVLLCLKFQGFFFKSVQKNSQLKKTILNTCHKYIIL*TRLIAV 306
NVL C+ G F KSV+ QL ++ TC +Y +R I V
Sbjct: 16 NVLKCVF--GHFGKSVKSKRQLGNKLVATCKRYSQYRSRCIRV 56
>AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 434 NVLLCLKFQGFFFKSVQKNSQLKKTILNTCHKYIIL*TRLIAV 306
NVL C+ G F KSV+ QL ++ TC +Y +R I V
Sbjct: 16 NVLKCVF--GHFGKSVKSKRQLGNKLVATCKRYSQYRSRCIRV 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,727,695
Number of Sequences: 27780
Number of extensions: 173062
Number of successful extensions: 410
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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