Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J06
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    27   0.12 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.9  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   7.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 440 HRNVLLCLKFQGFFFKSVQKNSQLKKTILNTC 345
           H N L C   +GFF +S+ KN+  +    N C
Sbjct: 198 HYNALTCEGCKGFFRRSITKNAVYQCKYGNNC 229


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 440 HRNVLLCLKFQGFFFKSVQKNSQLKKTILN 351
           H  V  C   +GFF +S+Q+  Q +    N
Sbjct: 78  HYGVHSCEGCKGFFRRSIQQKIQYRPCTKN 107


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 422 CLKFQGFFFKSVQKNSQLKKTILNTC 345
           C   +GFF +S+ KN+  +    N C
Sbjct: 1   CEGCKGFFRRSITKNAVYQCKYGNNC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,910
Number of Sequences: 438
Number of extensions: 2113
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)