Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J04
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1713 + 28939446-28939574,28939674-28940231,28940338-289404...    29   1.7  
04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106...    29   2.9  
03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379     28   5.1  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     27   8.9  

>07_03_1713 +
           28939446-28939574,28939674-28940231,28940338-28940460,
           28940676-28940912
          Length = 348

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 202 EKNDETANQRKREDINHGFQQVKTAN*FYLKKIANSSRNLHNNVKDPSYV 351
           E  DE+    + +D+ HGF+ ++  N  YL   A      H  V D + V
Sbjct: 52  EYQDESVLWTESKDVGHGFRCIRMVNNIYLNLDAFHGDKSHGGVHDGTTV 101



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 211 DETANQRKREDINHGFQQVKTAN*FYLKKIANSSRNLHNNVKDPSYV 351
           DE+    + +D+ HGF+ V+  N  YL   A      H  V D + V
Sbjct: 282 DESVLWTESKDVGHGFRCVRMVNNIYLNFDAFHGDKDHGGVHDGTTV 328


>04_04_0338 +
           24509698-24510042,24510373-24510490,24510539-24510642,
           24510823-24511491
          Length = 411

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 132 MSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAA 37
           ++W     C+  A   LL F G+M G +G A+
Sbjct: 315 LAWRTAFVCVTTAASTLLPFFGSMVGLIGAAS 346


>03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379
          Length = 373

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 211 DETANQRKREDINHGFQQVKTAN*FYLKKIANSSRNLHNNVKDPSYV 351
           DE+    +  D+ HGF+ ++  N  YL   A      H  V+D + V
Sbjct: 284 DESVLWTESRDVGHGFRCIRMVNNIYLNFDALHGDKDHGGVRDGTTV 330


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 20  VYGLEGAAVPNDPNIFPINANSFSPASLMQGMSNIQDMASKAGFGPNMNGA-AISTVVDS 196
           V  L+   +   P+IF + AN+++   L +   N+  +    G  PN+     +     +
Sbjct: 354 VAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGT 413

Query: 197 AGKKMTKLLISENGKISTM 253
           AG+ +  L + ++ K S M
Sbjct: 414 AGRHLEALAVLQHIKDSGM 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,706,586
Number of Sequences: 37544
Number of extensions: 196357
Number of successful extensions: 445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)