Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_J03
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 129 3e-30
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 115 5e-26
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 91 9e-19
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 66 4e-11
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 61 8e-10
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 52 5e-07
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 45 8e-05
02_01_0046 - 311752-312138,312220-312372,312458-312653,312702-31... 33 0.26
09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929... 31 1.4
02_04_0298 - 21733620-21733805,21733900-21734025,21734128-217342... 30 2.4
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 29 3.2
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 29 4.2
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686... 29 5.5
02_01_0150 + 1063732-1064214,1064290-1064355,1064721-1064803,106... 28 9.6
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 129 bits (311), Expect = 3e-30
Identities = 61/117 (52%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Frame = +1
Query: 436 VWLSMGGVHEKDEKNSNKMYNTHIIIDDKGSLVQMYRKLHLFDVEIPERNVRLKESDFSN 615
+WLS+GG EK +S++ YNTH++IDD G + YRK+HLFDV++P N+ KES F+
Sbjct: 158 MWLSLGGFQEKGPDDSHQ-YNTHVLIDDSGEIRSSYRKIHLFDVDVP-GNMVYKESRFTT 215
Query: 616 AGDHIVAPVDTPVGKIGMAICYDMRFPELSTSLSIM-SADILTFPSAFTQATGEAXW 783
AGD +VA VD+P G++G+ +CYD+RFPEL L A +L PSAFT+ TGEA W
Sbjct: 216 AGDTVVA-VDSPFGRLGLTVCYDLRFPELYQCLRFKHQAQVLLVPSAFTKVTGEAHW 271
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 115 bits (276), Expect = 5e-26
Identities = 67/200 (33%), Positives = 106/200 (53%), Gaps = 4/200 (2%)
Frame = +1
Query: 196 VMSSKRIAVCQMTSVADKAANLKVVEGIIDSAAKENVQMLFFPEACDYICDNKKDIVNFS 375
++S ++A+CQ++ ADKA N+ I++AA +++ PE + N ++
Sbjct: 42 ILSWFKVALCQLSVTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYSNDS-FPEYA 100
Query: 376 EPI-FGGEIVGKYR---ELAEKYGVWLSMGGVHEKDEKNSNKMYNTHIIIDDKGSLVQMY 543
E I GG+ + E+A + L G + E++ NK+YNT + G L +
Sbjct: 101 EDIEAGGDAAPSFSMMSEVARSLQITLVGGSI---SERSGNKLYNTCCVFGSDGELKGKH 157
Query: 544 RKLHLFDVEIPERNVRLKESDFSNAGDHIVAPVDTPVGKIGMAICYDMRFPELSTSLSIM 723
RK+HLFD++IP + + KES AG + VDT VG+IG+ ICYD+RF EL+ +
Sbjct: 158 RKIHLFDIDIPGK-ITFKESKTLTAGQDLTV-VDTDVGRIGIGICYDIRFQELAMLYAAR 215
Query: 724 SADILTFPSAFTQATGEAXW 783
A +L +P AF TG W
Sbjct: 216 GAHLLCYPGAFNMTTGPLHW 235
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 91.1 bits (216), Expect = 9e-19
Identities = 42/104 (40%), Positives = 66/104 (63%)
Frame = +1
Query: 472 EKNSNKMYNTHIIIDDKGSLVQMYRKLHLFDVEIPERNVRLKESDFSNAGDHIVAPVDTP 651
E++S +++NT +I G + +RKLHLF+++IP ++ +ESD AG VDT
Sbjct: 67 ERSSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPG-DITFRESDTFTAGQEPTI-VDTD 124
Query: 652 VGKIGMAICYDMRFPELSTSLSIMSADILTFPSAFTQATGEAXW 783
VG+IG+ IC+D+RFPEL+ A ++ +PSAF +TG+ W
Sbjct: 125 VGRIGIGICHDIRFPELAMLYRSRGAHLICYPSAFNMSTGQLLW 168
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 65.7 bits (153), Expect = 4e-11
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 3/187 (1%)
Frame = +1
Query: 202 SSKRIAVCQMTSVADKAANLKVVEGIIDSAAKENVQMLFFPEACD--YICDNKK-DIVNF 372
S +A Q ++ N+ E +I A K+ ++ E + Y C ++ D
Sbjct: 9 SKVSVAAVQFACTDVESENVDTAERLIREAHKKGANIVLVQELFEGQYFCQAQRLDFFQR 68
Query: 373 SEPIFGGEIVGKYRELAEKYGVWLSMGGVHEKDEKNSNKMYNTHIIIDDKGSLVQMYRKL 552
++P G + ++++LA++ V + + E + N YN+ IID G+ + +YRK
Sbjct: 69 AKPYKGNPTIIRFQKLAKELEVVIPVSFFEEAN----NAHYNSVAIIDADGTDLGLYRKS 124
Query: 553 HLFDVEIPERNVRLKESDFSNAGDHIVAPVDTPVGKIGMAICYDMRFPELSTSLSIMSAD 732
H+ D +E + N GD T IG+ IC+D FPE + ++ + A+
Sbjct: 125 HIPD------GPGYQEKFYFNPGDTGFKAFKTKYATIGVGICWDQWFPECARAMVLQGAE 178
Query: 733 ILTFPSA 753
IL +P+A
Sbjct: 179 ILFYPTA 185
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 61.3 bits (142), Expect = 8e-10
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 9/199 (4%)
Frame = +1
Query: 214 IAVCQMTSVAD-KAANLKVVEGIIDSAAKENVQMLFFP-----EACDY---ICDNKKDIV 366
IA+ + AD K A ++ V+ +ID+A V +L EA C +K
Sbjct: 105 IAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLSEAWTMPFAFCTREKRWC 164
Query: 367 NFSEPIFGGEIVGKYRELAEKYGVWLSMGGVHEKDEKNSNKMYNTHIIIDDKGSLVQMYR 546
F+EP+ GE ++LA+KY + + + + E+D + ++NT ++I + G+++ ++R
Sbjct: 165 EFAEPV-DGESTQFLQQLAKKYNMVI-VSPILERDVNHGEIVWNTAVVIGNHGNIIGIHR 222
Query: 547 KLHLFDVEIPERNVRLKESDFSNAGDHIVAPVDTPVGKIGMAICYDMRFPELSTSLSIMS 726
K H IP R ES + G+ +T GKIG+ ICY P + +
Sbjct: 223 KNH-----IP-RVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNG 276
Query: 727 ADILTFPSAFTQATGEAXW 783
A+I+ PSA E W
Sbjct: 277 AEIVFNPSATVGELSEPMW 295
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 52.0 bits (119), Expect = 5e-07
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Frame = +1
Query: 391 GEIVGKYRELAEKYGVWLSMGGVHEKDEKNSNKMYNTHIIIDDKGSLVQMYRKLHLFDVE 570
G V + LA KY ++L MG V E+ +YNT + D G + +RK+
Sbjct: 110 GPEVTRLAALAGKYKIFLVMGVV----ERVGYTLYNTVLFFDPLGKYLGKHRKV------ 159
Query: 571 IPERNVRLKESDFSNAGDHIVAPV-DTPVGKIGMAICYDMRFPELSTSLSIMSADILTFP 747
+P R+ F GD PV DTP+GKIG IC++ R P L T++ I P
Sbjct: 160 MPTGLERV----FWGFGDGSTIPVYDTPIGKIGAVICWENRMPLLRTAMYAKGVQIYCAP 215
Query: 748 SA 753
+A
Sbjct: 216 TA 217
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 44.8 bits (101), Expect = 8e-05
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Frame = +1
Query: 391 GEIVGKYRELAEKYGVWLSMGGVHEKDEKNSNKMYNTHIIIDDKGSLVQMYRKLHLFDVE 570
G V + +A KY V+L MG + E+ +Y + + D G + +RKL
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVI----EREGYTLYCSVLFFDPLGRYLGKHRKL------ 163
Query: 571 IPERNVRLKESDFSNAGDHIVAPV-DTPVGKIGMAICYDMRFPELSTSLSIMSADILTFP 747
+P R+ GD PV DTP+GKIG IC++ + P L T+L +I P
Sbjct: 164 MPTALERI----IWGFGDGSTIPVYDTPLGKIGALICWENKMPLLRTALYGKGIEIYCAP 219
Query: 748 SAFTQATGEA 777
+A ++ +A
Sbjct: 220 TADSRQVWQA 229
>02_01_0046 -
311752-312138,312220-312372,312458-312653,312702-312792,
312808-313228
Length = 415
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 574 VSLHRKDVVSCTFVQGILCHLLLCACCTFCLNFFHPFRE--PLP*TTKLHI 428
++LH+K + +C+ + + + C TFC FHP E PL TKLH+
Sbjct: 91 LTLHKKYIFACSLLSDGVRDSIRCLQLTFCA--FHPMAELGPLRSLTKLHL 139
>09_06_0140 +
21090686-21091645,21092142-21092221,21092705-21092906,
21093052-21093327,21093414-21093482,21093638-21093785,
21094080-21094228,21094897-21095061,21095623-21095732,
21095868-21095946,21095947-21096240
Length = 843
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = -3
Query: 752 ADGNVKMSALIILRDVLSSGKRIS*HIAIPIFPTGVSTGATIWSPAFEKSLSFNLTF 582
AD V + + + + +G+R + ++ IP++P GV T A++ F ++ + + +
Sbjct: 580 ADNLVPIELALKIASKIRAGERFAVYVVIPMWPEGVPTAASVQEILFFQAQTMEMMY 636
>02_04_0298 -
21733620-21733805,21733900-21734025,21734128-21734213,
21734751-21734866,21734951-21735628,21736080-21736105
Length = 405
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 556 DVVSCTFVQGILCHLLLCACCTFCLNFFHP 467
D T VQ LCH + C CC FF P
Sbjct: 355 DDTGITNVQHDLCHFIHCECCHVKRRFFDP 384
>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 378 LRKVYYILFVITDVVACFWKEKHLNIFFGSTINDAF 271
LR + +LF I + C W+E +FF +++ F
Sbjct: 1162 LRALVALLFSINSINECIWRESEALVFFEKLLSNLF 1197
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 212 LLLDMTGVLQKCLLKSSLNMFLKVFSGQNFIVRRYCNFDKLFFYCHSIE 66
L+LD TG ++ + S+L + +FS ++ RY + F YC + E
Sbjct: 2636 LMLDYTGTIKMLIWNSNLFAWSVLFSNPSYTCERYASCGP-FGYCDAAE 2683
>04_03_0461 -
16165126-16165419,16165947-16166195,16168510-16168645,
16171251-16171469,16172738-16173116,16173660-16173918,
16176052-16176315
Length = 599
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Frame = +1
Query: 355 KDIVNFSEPIFGGEIVGKYRELAEKYGVWLSMGGVHEKDEKNSNKMYNTHIIIDDKGSLV 534
K++ +F ++G + + ++ W+ +K +++ ++ TH K LV
Sbjct: 65 KEVSSFEPSVWGDFFINYDTKPLQRSEDWMMEKA--DKLKQDVRILFETHNDTAKKMHLV 122
Query: 535 QMYRKL---HLFDVEIPERNVRLKESDFSNAGDHIVA 636
++L HLF EI +KES+F+++ H VA
Sbjct: 123 DAVQRLGIDHLFQDEINNVISDIKESEFTSSSLHEVA 159
>02_01_0150 +
1063732-1064214,1064290-1064355,1064721-1064803,
1065100-1065155,1065247-1066061
Length = 500
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 746 GN-VKMSALIILRDVLSSGKRIS*HIAIPIFPTGVSTGATI 627
GN V M + + +++G+R + +I IP++P GV T I
Sbjct: 232 GNLVPMEIALKVASKIAAGERFAVYIVIPMWPEGVPTSGPI 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,519,583
Number of Sequences: 37544
Number of extensions: 433674
Number of successful extensions: 1151
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -