Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_J03
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.26 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.79 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   4.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 443 NQTPYFSANSLYFPTISPPNIGSEKFT 363
           + +P  S+ S +F ++SP ++GSE +T
Sbjct: 88  SSSPSPSSPSSFFSSVSPTSLGSENYT 114


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -3

Query: 617 AFEKSLSF---NLTFLSGISTSKRCSFLYICTRDPLSSIIMCV 498
           AF   LSF   + T +SG + ++RC+F   C    L++I+ CV
Sbjct: 120 AFLFQLSFATTSTTIVSG-AMAERCNFKAYCLFSFLNTIVYCV 161


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 23  LITKIKDIM*LSQYIQYYD-NKKIIYQNYSIFVQ 121
           +I+ + +    S Y  Y + NKK+ Y+NY I ++
Sbjct: 81  IISSLSNNYKYSNYNNYNNYNKKLYYKNYIINIE 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,186
Number of Sequences: 438
Number of extensions: 5301
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)