Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_J01
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 89 6e-19
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 83 4e-17
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 35 0.013
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 30 0.47
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.4
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 28 1.9
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.5
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 5.8
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 89.4 bits (212), Expect = 6e-19
Identities = 58/178 (32%), Positives = 95/178 (53%), Gaps = 3/178 (1%)
Frame = +1
Query: 310 DSDETTFRFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEIRRLSPDILCL 489
+++++ +++YNVLAQ + + + S LKWK+RSR L E+ SP + C+
Sbjct: 113 ETEKSALDITIMTYNVLAQTNIRRSMFPH---SGEALKWKNRSRMLANELTYYSPTLGCM 169
Query: 490 QEVQLSHLETFYSK-FENIGYQGVFKQKTGDRQDGCAIYFKKSLFDLDDQISVEF-FQPE 663
QEV + FY K +GY+ F + G + G I++K SLF +++ + E
Sbjct: 170 QEVDAEFVPNFYKKLLGGLGYELHFIKGEG-KTHGIMIFWKSSLFKKVQDLTIYYDDHDE 228
Query: 664 LP-ILNRDNIGVIVKLSPKELPGSSIVVATTHLLYNPXRTDVRLAQIKILLAEIDXFA 834
LP +N NIG V+L + P + +ATTHL ++P + RL Q IL+ E++ A
Sbjct: 229 LPGRMNTKNIGCCVRLERVDDPSRGLFLATTHLFWHPYGSYERLRQGAILVKEVNKMA 286
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 83.4 bits (197), Expect = 4e-17
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 24/197 (12%)
Frame = +1
Query: 304 KTDSDETTFRFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEIRRLSPDIL 483
K + +F ++SYNVL + Y Y L W +R + QE+ + DI+
Sbjct: 326 KPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSWA--LSWSYRKDLIMQELGGYNADII 383
Query: 484 CLQEVQLSHLETFYSKFENI-GYQGVFKQKTGDRQ---------DGCAIYFKKSLFDLDD 633
CLQEV + + +TF++ ++ GY+GV K+ R DGCA +FK S + + +
Sbjct: 384 CLQEVDVENYDTFFAPQMSLKGYKGVHFPKSRVRTMNEVERRIVDGCATFFKTSKYVMHE 443
Query: 634 QISVEFFQ-PEL-------------PILNRDNIGVIVKLSPKELPGSSIVVATTHLLYNP 771
++ +E+ Q P L ++ +DNI VI L KE GS ++VA H+ ++P
Sbjct: 444 KMVIEYNQAPSLRRQDIKLTSNMYNRVMTKDNISVITLLENKE-NGSRLIVANCHIHWDP 502
Query: 772 XRTDVRLAQIKILLAEI 822
DV++ Q+ +L+ EI
Sbjct: 503 QFRDVKVIQVAMLMDEI 519
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 35.1 bits (77), Expect = 0.013
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +1
Query: 454 EIRRLSPDILCLQEVQLSHLETFYS-KFENIGYQGVFKQKTGDRQD--GCAIYFKKSLFD 624
++ RL ++ CL++ QLS +T +S E G Q K G+ D G + + K +
Sbjct: 467 KVLRLDEEMKCLKDEQLSQFDTVFSLTDERDGLQKDLKNTKGNLDDEIGRSAFLKSQI-- 524
Query: 625 LDDQISVEFFQPELPILNRDNIGVIVKLSPKELPGSSI 738
D ++++E L L++ N + ++S K +S+
Sbjct: 525 RDQELTIEKLHDSLETLSQTNNSLQCEISEKNAELNSV 562
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 29.9 bits (64), Expect = 0.47
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 88 SGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKS 240
S +S++ ES DN +S + S+SS ED+ DSE S
Sbjct: 162 SDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 212
Score = 29.9 bits (64), Expect = 0.47
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 88 SGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKS 240
S +S++ ES DN +S + S+SS ED+ DSE S
Sbjct: 216 SDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 266
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +1
Query: 88 SGASTTKGQMSD---ESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKS 240
SG+S+ + S ES DN +S + S+SS ED+ DSE S
Sbjct: 105 SGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 158
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 100 TTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQ 213
+T G +S S +SF GT +S SS E+T+ Q
Sbjct: 523 STSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTTTTQ 560
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 600 NSASVLPVSGFLFEDTLVPDVFEF 529
N S+ P++ FLF++ L PD+ F
Sbjct: 501 NVTSIAPINAFLFQEYLFPDLQHF 524
>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 253
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 586 DGCAIYFKKSLFDLDDQISVEFFQPELPILNRDNIGVIVKLSPKELPGSSI 738
D ++ +S L++ S ++ E N D+ + KLSP ELP + I
Sbjct: 172 DSLSVSKNRSFISLEESASNQYDAAEAFYFNADSSSPLRKLSPIELPVTPI 222
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 553 GVFKQKTGDRQDGCAIYFKKSLFDLDDQISVEFFQPELPILNRDN 687
GVF + +D C Y+K+ +F DD++S E+ + +L+ DN
Sbjct: 2227 GVFTKLLRKTRDSC--YYKRYMFVFDDELSPEWVEAMNSLLD-DN 2268
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 169 EVSDS-SGEDTSIVEQKYDSEDAKSE-HHRRPTK 264
EV D SGED +E+K EDAK + RP+K
Sbjct: 982 EVEDEESGEDWDELERKARQEDAKHDAFEERPSK 1015
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,641
Number of Sequences: 5004
Number of extensions: 68097
Number of successful extensions: 222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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