Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_J01
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 114 1e-25
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 95 8e-20
05_04_0171 - 18701946-18702242,18702621-18702768,18703665-187037... 85 7e-17
10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428... 79 3e-15
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 78 1e-14
05_05_0325 + 24109469-24109665,24110284-24110400,24110497-241109... 32 0.66
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695... 29 6.1
11_06_0291 + 22008412-22012284 28 8.1
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 28 8.1
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 114 bits (274), Expect = 1e-25
Identities = 65/185 (35%), Positives = 98/185 (52%)
Frame = +1
Query: 280 RTWETVGKKTDSDETTFRFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEI 459
R W + + SD ++SYN+LA YHP LY+D ++W R R + +EI
Sbjct: 76 RRWVLAEEASTSDGDACT--IMSYNILADNNAHYHPDLYLDVPWDAMRWDSRRRLIIREI 133
Query: 460 RRLSPDILCLQEVQLSHLETFYSKFENIGYQGVFKQKTGDRQDGCAIYFKKSLFDLDDQI 639
R PD++CLQEV ++ EN GYQ FK +TGD +DGCA ++K L ++
Sbjct: 134 RHWDPDLVCLQEV--DRFRDIATEMENRGYQSRFKGRTGDAKDGCATFWKSKGLHLLEED 191
Query: 640 SVEFFQPELPILNRDNIGVIVKLSPKELPGSSIVVATTHLLYNPXRTDVRLAQIKILLAE 819
S++F + L R+N+ I +VV H+L+NP R DV+L QI++LL +
Sbjct: 192 SIDFSEYNL----RNNVAQIFVFELNR--AQKLVVGNIHVLFNPKRGDVKLGQIRMLLEK 245
Query: 820 IDXFA 834
+ A
Sbjct: 246 ANALA 250
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 94.7 bits (225), Expect = 8e-20
Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 35/199 (17%)
Frame = +1
Query: 331 RFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEIRRLSPDILCLQ------ 492
RFKV+SYN+LA YL + H +LY + W R +L E SPDILCLQ
Sbjct: 191 RFKVLSYNILADYLAQEHQFLYERIPSFIMDWNWRKEKLVFEFGLWSPDILCLQVIYNCC 250
Query: 493 ---------------EVQLSHLETFYSKFENIGYQGVFKQKTGDRQDGCAIYFKKSLFDL 627
+V++ + GY G++K +TG+ DGCAI+++ + F L
Sbjct: 251 TAVIQKGCAAKSIVKKVEVDKFTDLEQEMATRGYNGIWKMRTGNATDGCAIFWRTARFQL 310
Query: 628 DDQISVEFFQPELPILNRDNIGVIVKLSPKELPGS--------------SIVVATTHLLY 765
Q +EF + +L RDN+ I L +PG+ I+V TH+LY
Sbjct: 311 RYQEDIEFNKIDL----RDNVAQICVLE-SVIPGNVQTESSPNHPQQAKQIIVCNTHVLY 365
Query: 766 NPXRTDVRLAQIKILLAEI 822
NP R D++L Q++ LL +
Sbjct: 366 NPKRGDIKLGQVRTLLDRV 384
>05_04_0171 -
18701946-18702242,18702621-18702768,18703665-18703786,
18704360-18704429,18704922-18704971,18705107-18705156,
18705296-18705359
Length = 266
Score = 85.0 bits (201), Expect = 7e-17
Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Frame = +1
Query: 259 TKIPLNFRTWETVGKKTDSDETTFRFKVVSYNVLAQYLLE--YHPYLYIDCSPRNLKWKH 432
T+ +F T ++D+ ++F++VSYN+LAQ ++ + P+ C LKWK
Sbjct: 3 TQAQPSFAPLPTAQSESDAGAAGYQFRLVSYNILAQVYVKSAFFPHSPSAC----LKWKT 58
Query: 433 RSRRLYQEIRRLSPDILCLQEVQLSHLETFYSK-FENIGYQGVFKQKTGDRQDGCAIYFK 609
RS+ + E++ D++C+QE L +TFY K EN GY ++ Q++GD++DGC I++K
Sbjct: 59 RSKAVLSELKSFEADLMCIQE--LDEYDTFYKKNMENSGYSSIYIQRSGDKRDGCGIFYK 116
>10_07_0177 -
13841148-13841267,13841569-13841645,13842710-13842860,
13842942-13843056,13843145-13843236,13843317-13843370,
13843849-13843935,13844023-13844109,13844191-13844274,
13844359-13844445,13844793-13845549,13846491-13846648
Length = 622
Score = 79.4 bits (187), Expect = 3e-15
Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 32/207 (15%)
Frame = +1
Query: 310 DSDETTFRFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEIRRLSPDILCL 489
DS + F V+SYN+LA Y Y C L W +R + L +EI DI+CL
Sbjct: 246 DSQTSFGTFSVLSYNILADAYATSDAYSY--CPTWALSWTYRRQNLMREIIGYHADIICL 303
Query: 490 QEVQLSHLETFYS-KFENIGYQGVFKQKTGD-------RQDGCAIYFKKSLFDLDDQISV 645
QEVQL+H E F+S + + GYQ ++K++T + DGCA +F++ F + V
Sbjct: 304 QEVQLNHFEDFFSPELDKHGYQALYKKRTTEVYTGAPHAIDGCATFFRRDKFSHVKKYEV 363
Query: 646 EFFQP----------------ELPILNRDNIGVIVKLSPK------ELPGSS--IVVATT 753
EF + L L +DN+ +I L K + PG + VA T
Sbjct: 364 EFNKAAQSLTDAIIPSTQRRVALSRLIKDNVALIAVLEAKFGNHGTDNPGKRQLLCVANT 423
Query: 754 HLLYNPXRTDVRLAQIKILLAEIDXFA 834
H+ + DV+L +++ LL ++ A
Sbjct: 424 HVNVHQDLKDVKLWEVQTLLKGLEKIA 450
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 77.8 bits (183), Expect = 1e-14
Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Frame = +1
Query: 310 DSDETTF-RFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEIRRLSPDILC 486
DS ++F F V+SYN+LA Y Y C L W +R + L +EI DI+C
Sbjct: 247 DSRNSSFGTFTVLSYNILADTYATSDTYSY--CPTWALSWPYRRQNLLREIIGYHADIIC 304
Query: 487 LQEVQLSHLETFYS-KFENIGYQGVFKQK-----TGDRQ--DGCAIYFKKSLFDLDDQIS 642
LQEVQ +H E F++ + + GYQ +FK++ TG+ Q DGCA +F++ F +
Sbjct: 305 LQEVQSNHFEEFFAPELDKHGYQALFKKRTTEVYTGNLQSIDGCATFFRRDKFSHVKKYE 364
Query: 643 VEFFQP----------------ELPILNRDNIGVIVKLSPK------ELPGSS--IVVAT 750
VEF + L L +DNI +I L K + P + VA
Sbjct: 365 VEFNKAAQSLTDAIIPAAQRKVALTRLIKDNIALIAVLEAKFGSHGADNPSKRQLLCVAN 424
Query: 751 THLLYNPXRTDVRLAQIKILLAEIDXFA 834
TH+ + DV+L Q+ LL ++ A
Sbjct: 425 THINVHQDLKDVKLWQVNTLLKGLEKIA 452
>05_05_0325 +
24109469-24109665,24110284-24110400,24110497-24110914,
24110997-24111416
Length = 383
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 88 SGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIV 207
+GA G D+++ + NH S GG SDS+G S V
Sbjct: 344 TGAGEDDGDGDDDAERSKNHRSSGGVRSSSDSNGHGASAV 383
>10_03_0007 -
6956215-6956223,6957082-6957300,6957874-6957978,
6958062-6958175,6958342-6958467,6958583-6958697,
6958791-6958867,6958956-6959179,6959848-6959953,
6960065-6960163,6960282-6960467,6960611-6960613
Length = 460
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +1
Query: 424 WKHRSRRLYQEIRRLSPDILCLQEVQLSH--LETFYSKFENIGYQGVFK-QKTGDRQDGC 594
W R+ ++ + I+CLQEV L + L Y K +FK +T +R DG
Sbjct: 74 WFSRNEKIIDRLLADCSSIICLQEVWLGNDELVDMYEKRLGDANYSLFKLARTNNRGDGL 133
Query: 595 AIYFKKSLF 621
K+ F
Sbjct: 134 LTAVNKNYF 142
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +1
Query: 121 DESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRRP 258
+E + T+ GG + G+D +++ YD E+ + E P
Sbjct: 486 EEREGTEEKQVGGGEKKEEKEDGDDDGVIDDNYDEEEEEEEEDDDP 531
>07_03_0336 +
16911947-16912144,16912636-16912692,16912917-16913696,
16914666-16914713,16914795-16916032,16916776-16916860,
16917323-16917379
Length = 820
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 422 SGNTDLDVSTKKFADCHLTYCASKKFNCRTLKRSILNSKTSGTKVSSN 565
S + +DV T+ D +Y C T K+SI+NS + + V N
Sbjct: 466 SDSKSIDV-TRNIGDKPDSYAERADAKCNTSKKSIINSNSENSNVQPN 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,214,936
Number of Sequences: 37544
Number of extensions: 422400
Number of successful extensions: 1222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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