Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_I23
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    29   4.5  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    29   4.5  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    29   4.5  
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    29   4.5  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      29   4.5  
Z70781-7|CAJ55254.1|  380|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z82062-4|CAB04888.1|  266|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 327 LFLKGKNDPIPFDDSQGFTTDELRRF 404
           LF+ G N  +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 327 LFLKGKNDPIPFDDSQGFTTDELRRF 404
           LF+ G N  +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
           isoform b protein.
          Length = 1444

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 327 LFLKGKNDPIPFDDSQGFTTDELRRF 404
           LF+ G N  +PF+ ++ FTT + R F
Sbjct: 379 LFVSGNNGQVPFEFTEHFTTKQKRPF 404


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 327 LFLKGKNDPIPFDDSQGFTTDELRRF 404
           LF+ G N  +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 327 LFLKGKNDPIPFDDSQGFTTDELRRF 404
           LF+ G N  +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369


>Z70781-7|CAJ55254.1|  380|Caenorhabditis elegans Hypothetical
           protein F57A8.2b protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 332 EESHHRKIIFCSSVLLCQYLVIFFTVILHADFSYQKF 222
           EE   RK+I  + V++ Q L++++   + +++ Y KF
Sbjct: 300 EEGRKRKLILVAFVVITQPLIMWWLTSVASNYDYDKF 336


>Z82062-4|CAB04888.1|  266|Caenorhabditis elegans Hypothetical
           protein W02A11.8 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
 Frame = +3

Query: 120 NKFEASLVKFDVAFPYGDKHDAFVALAKDSK---DVDELLIAEVG-----VKDYGEKDNE 275
           NKFE+  +  D    +GD  +     A D K   + D  +I EVG     ++D+GE+  +
Sbjct: 55  NKFESIAMSAD----FGDFDEMVYNYAIDGKCTIEADITIIKEVGDARAKLRDFGEETRD 110

Query: 276 VLAKKYGATKDNFPVVRLFLKGKN 347
           V         + F V ++FL  ++
Sbjct: 111 VSDVVINVQNEKFHVSKMFLAAQS 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,019,551
Number of Sequences: 27780
Number of extensions: 233669
Number of successful extensions: 706
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)