Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_I16
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    28   1.4  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    28   1.9  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    28   1.9  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    27   3.3  
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    27   3.3  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   5.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   10.0 

>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +1

Query: 667 LTTXYANDVIASCAFGLKVDSITEENNQFYAMGKAASTFNFRAASHXLWSCIGPE 831
           L T    +V+ SC FG  V     E N+F  +G      N +  S    SCI P+
Sbjct: 65  LATSLDENVVVSCGFGQDVYVWNPETNEFRDLGN-----NAQHPSECWSSCISPD 114


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 431 WTIGLSSTRTPTRSSEGACSS*EIKTGKTCAQRFHRRS 544
           WTI LS   T TRS+  +CS+    T  T A R  +++
Sbjct: 38  WTIALSQHETETRSTRTSCST---TTESTIAMRSKQKA 72


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 205 LFSKHGVKGFT 237
           LFSKHGVKGFT
Sbjct: 231 LFSKHGVKGFT 241


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = -2

Query: 563 SFILELVNAGESVERMSF 510
           SFILE V  GESV R SF
Sbjct: 49  SFILESVTQGESVSRYSF 66


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 187 YKQAYSLFSKHGVKGFTPLPFFGNMGR 267
           YKQA+SLF +HG  G  P    G++ R
Sbjct: 8   YKQAFSLFDRHGT-GRIPKTSIGDLLR 33


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 265 RIVIKMDHFSDHIQSLYDSFPEERFVGRYEFLNPMVIIRDIELLK 399
           ++V  +DHF D I S+  +F     V    + N +  IRD  L++
Sbjct: 507 KLVAYLDHFGDEILSI--NFDPSNAVTYINYANKVAFIRDPYLIE 549


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -1

Query: 498  SQEEQAPSEERVG-VLVDDSPMVQEMLEVLN---RDFLQ*LNVTNYNHWVEKFVSSDE 337
            S++  A   E VG V +   PM  +    +N   ++ L  +N T+  H+++KF + DE
Sbjct: 1039 SEDLAAVVGEDVGRVAILQGPMAAKHSTKVNEPAKELLDGINETHIQHFIKKFYAGDE 1096


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,094
Number of Sequences: 5004
Number of extensions: 62340
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)