Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_I08
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0398 + 3092577-3093857                                          155   3e-38
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996...    29   2.8  
03_06_0756 - 36032432-36033871                                         28   6.5  

>03_01_0398 + 3092577-3093857
          Length = 426

 Score =  155 bits (377), Expect = 3e-38
 Identities = 86/208 (41%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
 Frame = +1

Query: 112 VFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDV 291
           V+NF AGPA LP  V +  + EL ++  SG+S++E SHR   +     + +  +R LL V
Sbjct: 65  VYNFAAGPATLPLSVLQRAQAELVDYRGSGMSIMEMSHRGKEFDAAIKKAEADLRALLAV 124

Query: 292 PDNYKVXXXXXXXXXXXXXVPLNLI-SRTGTADYVVTGAWSXXXXXXXXXYGKVNLVLPP 468
           PD ++V              PLNL  S +  AD+VV+G+WS         +   ++    
Sbjct: 125 PDTHEVLFLQGGATSQFAAAPLNLCASPSDPADFVVSGSWSDKAFKEAKKFSAASVAWSG 184

Query: 469 TD-KYEDIPDQTKWNLDPNASYVHICTNETIHGVEFDFIPDTKGVP--LIADMSSNIMSX 639
            D KY  +P       +P A ++HIC+NETIHGVEF   P+ K     L+ADMSSN  S 
Sbjct: 185 KDGKYTSLPPFDAIEQNPEARFLHICSNETIHGVEFKDYPEPKNKSGILVADMSSNFCSK 244

Query: 640 KVDVSKFGVIYAGAQKNIGTSGVXLVIV 723
            VDVS+FG+IYAGAQKN+G SGV + IV
Sbjct: 245 PVDVSRFGLIYAGAQKNVGPSGVTIAIV 272


>09_03_0003 +
           11396076-11396386,11398803-11398869,11399194-11399698,
           11400903-11401038,11401186-11401257,11401891-11401923,
           11401924-11402047,11402387-11402437,11403437-11403563,
           11404230-11404298,11404369-11404486,11404755-11405151
          Length = 669

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 454 LVLPPTDKYEDIP-DQTKWNLDPNASYVHICTNETI 558
           L+LPP  +Y D P D+  W    ++  ++I TN+TI
Sbjct: 120 LLLPPFQRYPDDPYDRLWWPWQGSSRLLNISTNQTI 155


>03_06_0756 - 36032432-36033871
          Length = 479

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -3

Query: 488 MSSYLSVGGSTKFTFPYFFASLAALADHAPVT 393
           + SYLS  G    T P  FAS  ALA H P+T
Sbjct: 162 LKSYLSAQG---VTLPTLFASALALALHVPLT 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,581,790
Number of Sequences: 37544
Number of extensions: 337389
Number of successful extensions: 742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)