Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_I07
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 332 3e-92
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 196 4e-51
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 186 3e-48
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 169 4e-43
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 29 1.0
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 4.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 4.1
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 5.5
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 9.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 332 bits (816), Expect = 3e-92
Identities = 153/234 (65%), Positives = 180/234 (76%)
Frame = +2
Query: 104 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 283
MREIVH+QAGQCGNQ+GA FW I++EHG+D G+Y GTS+ Q ER++VY+NEA+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA----- 55
Query: 284 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 463
GGKYVPRA+L+DLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL D
Sbjct: 56 -GGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELAD 114
Query: 464 AVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 643
AVLDVVR+E E CD LQGFQ KIREEYPDR+M T+SV P+PK
Sbjct: 115 AVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPK 174
Query: 644 VSDTVVEPYNAVLSIHQLXENTDETYCIXNEALYDICYRTLKVPNPTYGDLNHL 805
SDTVVEPYNA LS+HQL EN+DET+CI NEAL I TLK+ +P+Y DLNHL
Sbjct: 175 SSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHL 228
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 196 bits (477), Expect = 4e-51
Identities = 97/236 (41%), Positives = 140/236 (59%), Gaps = 2/236 (0%)
Frame = +2
Query: 104 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA-SVATA 280
MRE++ + GQ G QIG WE+ EHGI P G T + ++ + + Y N+ +
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLNDGFGTFFS 58
Query: 281 ESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 457
E+G GK+VPR+I +DLEP +D VR+G Y LF P+ V G+ A NN+A+GHYT G E+
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118
Query: 458 VDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPS 637
+D+VL+ +R+ +NC LQGF ++ EY + +SV P+
Sbjct: 119 IDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPA 178
Query: 638 PKVSDTVVEPYNAVLSIHQLXENTDETYCIXNEALYDICYRTLKVPNPTYGDLNHL 805
P+VS +VVEPYN+VL+ H +N+D T+ + NEA YDIC R L + PTY +LN L
Sbjct: 179 PQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRL 234
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 186 bits (453), Expect = 3e-48
Identities = 95/236 (40%), Positives = 130/236 (55%), Gaps = 2/236 (0%)
Frame = +2
Query: 104 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLER--ISVYYNEASVAT 277
MREI+ + GQ G QIG WE+ EHGI P G + Q S +++E
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ-- 58
Query: 278 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 457
GKYVPR+I +DLEP +D VR+G Y LF P+ + G+ A NN+A+GHYT G EL
Sbjct: 59 ----GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114
Query: 458 VDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPS 637
VD V D +R+ +NC LQGF ++ EY + +SV P+
Sbjct: 115 VDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPA 174
Query: 638 PKVSDTVVEPYNAVLSIHQLXENTDETYCIXNEALYDICYRTLKVPNPTYGDLNHL 805
P+VS +VVEPYN+VL+ H + D T+ + NE+ YDIC R L + P+Y +LN L
Sbjct: 175 PQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRL 230
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 169 bits (411), Expect = 4e-43
Identities = 86/236 (36%), Positives = 132/236 (55%), Gaps = 3/236 (1%)
Frame = +2
Query: 107 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 286
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R V++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS------D 56
Query: 287 GGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQS--GAGNNWAKGHYTEGAELV 460
+Y+PRAIL+DLEP ++ + S YG L+ P+N + ++ GAGNNWA G Y+ +
Sbjct: 57 DTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIF 115
Query: 461 DAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-S 637
+ ++D++ +E + D L+GF ++ + YP +I+ TYSV P S
Sbjct: 116 EDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNS 175
Query: 638 PKVSDTVVEPYNAVLSIHQLXENTDETYCIXNEALYDICYRTLKVPNPTYGDLNHL 805
VSD VV+PYN++L++ +L N D + N AL I L NPT+ N L
Sbjct: 176 QSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQL 231
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 425 AKGHYTEGAELVDAVLDVVRKECENCDCLQ 514
A+GH G ELV A D +RK+ EN L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 143 NQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERI 244
N++G E+++E+ +DPT + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 506 NRSSHTPCGLHQGRRRRAQR 447
+R H P G H GR RRA R
Sbjct: 50 SRMDHRPDGYHDGRGRRAYR 69
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 215 GTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLE 328
G+SD+ + +S + EAS + S VP+ +L D +
Sbjct: 49 GSSDVTMTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQ 86
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 356 GAYGQLFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 457
G YG +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,436
Number of Sequences: 5004
Number of extensions: 44297
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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