Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_I04
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0122 + 20333025-20333468 102 4e-22
12_02_0365 + 18045340-18045783 98 8e-21
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 31 1.3
07_01_1132 + 10531922-10532136,10532307-10532433,10532945-105331... 30 1.7
09_06_0287 + 22047404-22048409,22048754-22049967 29 4.0
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 28 7.1
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 28 7.1
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 28 7.1
09_03_0027 - 11690348-11690828,11694815-11695749 28 9.3
09_02_0019 + 3036563-3036740,3036905-3036913,3037355-3037493,303... 28 9.3
>11_06_0122 + 20333025-20333468
Length = 147
Score = 102 bits (244), Expect = 4e-22
Identities = 55/142 (38%), Positives = 87/142 (61%), Gaps = 2/142 (1%)
Frame = +2
Query: 245 MAKNTSKVGKKT-NEEIFAG-FQTLRNEQRQLGSKISELQMELNEHKIVIETLRGVELTR 418
MA GK+ NE+I A + +R+E QL +KI+EL+ME++EH +VI + ++ +R
Sbjct: 1 MASKAGGDGKEAINEQIIANTYGNMRSEMTQLYTKITELEMEVSEHSLVIGAIEPLDHSR 60
Query: 419 KCFRMFGGVLVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQR 598
+C+RM GGVLVERT+ EVLP + N E L + I + + L +K +EI ++ ++ IRI++
Sbjct: 61 RCYRMVGGVLVERTIREVLPAVHRNKEGLEEVIARMHEALEKKKKEITEFELKYKIRIRK 120
Query: 599 ADRTMPEPPPEQSTSTKSNVLV 664
AD E + + VLV
Sbjct: 121 ADSNADEEEGSKKEGSAQGVLV 142
>12_02_0365 + 18045340-18045783
Length = 147
Score = 97.9 bits (233), Expect = 8e-21
Identities = 51/127 (40%), Positives = 82/127 (64%), Gaps = 2/127 (1%)
Frame = +2
Query: 245 MAKNTSKVGKKT-NEEIFAG-FQTLRNEQRQLGSKISELQMELNEHKIVIETLRGVELTR 418
MA S K+ NE++ A + +R+E QL SKI+EL+ME++EH +VI + ++ +R
Sbjct: 1 MAGQPSGADKEVINEQMVANMYANMRSEMNQLYSKITELEMEVSEHSLVIGAIEPLDPSR 60
Query: 419 KCFRMFGGVLVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQR 598
+C+RM GGVLVERT+ EVLP + N E L + + + + L +K +EI ++ ++ IRI++
Sbjct: 61 RCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARMNEALEKKKKEITEFELKYKIRIRK 120
Query: 599 ADRTMPE 619
AD E
Sbjct: 121 ADSDTQE 127
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 30.7 bits (66), Expect = 1.3
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Frame = +2
Query: 317 NEQRQLGSKISELQMELNEHKIVIETLR-GVELTRKCFRMFGGVLVERTVAEVLPELISN 493
++ R+L +EL+ +L EH + IETLR ++++ L E T + + + +
Sbjct: 214 DDVRRLEKSNAELREQLEEHVVTIETLRTQIKISEAQHEKELKELKEITSSTYVDQ-AKS 272
Query: 494 YEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQRADRTMPEPPPEQSTSTKSNV 658
+Q + Q D L+ E+ I++ D R+ ++ E E S KSN+
Sbjct: 273 LQQTLEYKQKQIDSLSTSNTELQNSIKDLDERLSAYKQSRAE-ADEIIQSQKSNI 326
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 263 KVGKKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEHKIVIETLRG-VELTRK 421
KV + EEI + +QR+ IS+LQ E ++++ETLR +E TR+
Sbjct: 357 KVNAEAQEEIKRQAEAHLRQQREQKEVISKLQESEKEIRLLVETLRSKLEDTRE 410
>07_01_1132 +
10531922-10532136,10532307-10532433,10532945-10533100,
10533755-10533847,10534010-10534090,10534205-10534276,
10534608-10534676,10534764-10534874,10535039-10535089
Length = 324
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +2
Query: 254 NTSKVGKKTNEEIFAGFQTLRNEQRQLGSKIS-ELQME-LNEHKIVIETLRGVELTRKCF 427
N+ ++ K N+ F+G Q R+LG+ + ++ ++ LN + L ++ K
Sbjct: 217 NSKQIKAKVNKYAFSGGQDTVELHRELGANLDVDVSIKYLNFFLQDDDELEHIKKEYKAG 276
Query: 428 RMFGGVLVERTVAEVLPELISNYEQ 502
RM G + +R + EVL EL++ +++
Sbjct: 277 RMLTGEVKQRLI-EVLSELVARHQR 300
>09_06_0287 + 22047404-22048409,22048754-22049967
Length = 739
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 572 EEHDIRIQRADRTMPEPPPEQSTSTKSNVLVA 667
+ + +R++R + + P+PPP Q + VL+A
Sbjct: 207 DSYQVRLRRLNPSPPQPPPPQGAGDPTVVLIA 238
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Frame = +2
Query: 251 KNTSKVGKKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEHKIVIET------LRGVEL 412
+NTS+ K T ++ + + +Q+Q +KISEL+++L++ ++ ++ L +E+
Sbjct: 554 ENTSRELKSTILDLNSEKDAVLLQQQQSLAKISELELQLSKTQLELKNSEQKMQLLELEI 613
Query: 413 TRKCFRMFGGVLVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINK 565
T+K M ++ L + Q ++ S+E +Q EE+N+
Sbjct: 614 TQKSESM-------DSLTLSLKDETEKRVQAETSLMSMESMYSQSQEEVNR 657
>10_07_0081 - 12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 28.3 bits (60), Expect = 7.1
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Frame = +2
Query: 281 NEEIFAGFQTLRNEQRQLGSKISELQMELNEHKIVIETLR--GVELTRKCFRMFGGVLVE 454
NEE G + + + Q+QLG I + ++ L+ + IE L+ L K M +L
Sbjct: 866 NEEKINGCKEVASMQQQLGLSIKDQEL-LHSNLAQIEELKRENTLLKGKNAEMEQELLKA 924
Query: 455 RTVA----EVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQ-RADRTMPE 619
+ + + L + NY L +++LED+++ +E N + + + + R RTM
Sbjct: 925 QKCSHDNMDKLHGVERNYLHLRDNLKNLEDKISNLEDE-NHLLRQKALSLSPRHSRTMSH 983
Query: 620 PPPEQSTSTKS 652
P S KS
Sbjct: 984 PIGSSPCSPKS 994
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 329 QLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPELISNYEQLP 508
+L K+ E++MEL + VIE L LT K + G + R +A + +++ Y
Sbjct: 40 ELPGKVEEIRMELTTMENVIEQLDTAHLTDKVIK--GWIAEVRKLAYHVEDVMDKYSY-- 95
Query: 509 KAIQSLEDQLTQK 547
A+Q E+ +K
Sbjct: 96 HALQMEEEGFLKK 108
>09_03_0027 - 11690348-11690828,11694815-11695749
Length = 471
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 672 PLATSTLDLVEVDCSGGGSGMVRSARWMRISCSSMYLLI 556
P T T L + CS G G+ +AR +R+S Y L+
Sbjct: 163 PPGTRTYSLAGMGCSAGTVGIDMAARALRVSRRGGYALV 201
>09_02_0019 +
3036563-3036740,3036905-3036913,3037355-3037493,
3037593-3037678,3037831-3037907,3038004-3038255,
3039107-3039208
Length = 280
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Frame = -2
Query: 626 EVVQAWCDQHVGCEYHVP-QCIY*SLLPSE*VGLLGTGWP*VAVHN----C*SALATPQL 462
++ Q + D+H+ P + ++ L S + ++GTGW V VH+ C + +
Sbjct: 152 DLYQEYRDRHIQIAIANPNRQVHLLLSRSGIIDMIGTGWCFVRVHDAVQVCLQKVQSSSS 211
Query: 461 RCVRQARPQTSGNTYGSTPLPAKSQLRSYVR 369
++ + PQ SG+ S P Q S+++
Sbjct: 212 SSIKLS-PQASGDLADSVTTPKVQQRYSFLK 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,110,528
Number of Sequences: 37544
Number of extensions: 393768
Number of successful extensions: 1238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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