Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_I02
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    89   5e-19
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    27   4.0  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   4.0  
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    26   5.3  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.3  

>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 46/93 (49%), Positives = 61/93 (65%)
 Frame = +3

Query: 507 DQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTK 686
           D EN+  EH  W+ SD DY Y ELL R F ++R  NP + +G+K+K+ + PP V R G K
Sbjct: 152 DSENM-GEHA-WLKSDRDYYYPELLNRFFTLLRTNNPEL-AGEKRKYTIVPPSVHREG-K 207

Query: 687 KTSFANFTEICKTLHRQAKHLLDFLLAELGTXG 785
           KT FAN ++I K +HR   H++ FL AELGT G
Sbjct: 208 KTIFANISDISKRMHRSLDHVIQFLFAELGTSG 240


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 682 QRKPPLPILRKFVKLCIGRPSICWIFFWRNW 774
           +R P L I   F+K+C  RP I  +F W +W
Sbjct: 211 KRLPNLRIFSNFIKVC--RPLIYMLFMW-HW 238


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 218 TRALTLLTSKSSF*IKTSLLFLFLLQRRIKYHIVVHVY 105
           TR   L  S   F  K   +F+ LLQR++KY  +++ Y
Sbjct: 481 TRLNRLFLSIKYFSEKAMRVFILLLQRQVKYSELLNYY 518


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -1

Query: 739 ACRCKVLQISVKLAKEVFFVP 677
           AC+ ++L++ V+LAK+  FVP
Sbjct: 20  ACKKELLKLKVELAKQNLFVP 40


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 117 DDMIFDPSLXXXXXXXTGFDLEAALAGEQGESTSMETPADTGDVDA 254
           DD+  D  L        G +  A  A EQ E++S+  P+D  + D+
Sbjct: 282 DDLNLDLGLDDLLGDEQGANAPAIEADEQAETSSIHLPSDIMEDDS 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,119
Number of Sequences: 5004
Number of extensions: 44238
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)