Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_I02
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1699 - 28807154-28807218,28807324-28807466,28807570-288077... 116 3e-26
03_02_0903 + 12285874-12285918,12286715-12286820,12286906-122869... 86 3e-17
08_01_0838 - 8185083-8185910 31 1.4
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233... 29 3.2
05_06_0033 + 25074301-25074393,25074680-25075203,25076367-250764... 29 4.2
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549... 28 7.3
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 28 9.7
>07_03_1699 -
28807154-28807218,28807324-28807466,28807570-28807715,
28808142-28808242,28808314-28808365,28808483-28808538,
28808616-28808721,28809314-28809358
Length = 237
Score = 116 bits (278), Expect = 3e-26
Identities = 55/104 (52%), Positives = 75/104 (72%), Gaps = 11/104 (10%)
Frame = +3
Query: 507 DQENVEDEHGE-----------WVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIM 653
D + VE+E GE W G+D DY+YDELL RVF+I+RE NP + +G +++ +M
Sbjct: 87 DDQVVEEEEGEGIVLGGAPRYPWEGTDRDYNYDELLGRVFNILRENNPDL-AGDRRRTVM 145
Query: 654 RPPQVVRIGTKKTSFANFTEICKTLHRQAKHLLDFLLAELGTXG 785
RPPQV+R GTKKT F NF ++CKT+HRQ +H++ FLLAE+GT G
Sbjct: 146 RPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSG 189
>03_02_0903 +
12285874-12285918,12286715-12286820,12286906-12286961,
12287062-12287113,12287182-12287282,12287891-12288287,
12288852-12288937,12289061-12289078
Length = 286
Score = 86.2 bits (204), Expect = 3e-17
Identities = 42/84 (50%), Positives = 57/84 (67%), Gaps = 5/84 (5%)
Frame = +3
Query: 489 EDVRGEDQENVEDEHG-----EWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIM 653
+D GED+E G W G+D DY Y+ELL RVF+I+RE NP + +G +++ +M
Sbjct: 87 DDQIGEDEEGEGIVLGGATRYPWEGTDRDYKYEELLGRVFNILRENNPDL-AGDRRRTVM 145
Query: 654 RPPQVVRIGTKKTSFANFTEICKT 725
RPPQV+R GTKKT F NF ++CKT
Sbjct: 146 RPPQVLREGTKKTVFVNFMDLCKT 169
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Frame = +3
Query: 681 TKKTSFANFTEIC---KTLHRQAKHLLDFLLAELGTXG 785
++K ++ TEI +HRQ +H++ FLLAE+GT G
Sbjct: 188 SEKINYHELTEIIVYTSRMHRQPEHVMMFLLAEMGTSG 225
>08_01_0838 - 8185083-8185910
Length = 275
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 174 DLEAALAGEQGESTSMETPADTGDVDAPEDDNLD 275
D A AGE+G S+S + GD + EDD+ D
Sbjct: 84 DSSGASAGERGRSSSHRSDVKLGDAEEEEDDDED 117
>06_03_0697 -
23621808-23622127,23622194-23622932,23623298-23623327,
23624183-23624200,23625176-23625268,23625665-23626123
Length = 552
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 183 AALAGEQGESTSMETPADTGDVDAPEDD 266
A LAG QGES +M P GD D +D+
Sbjct: 8 ARLAGSQGESPAMLHPNGDGDGDGGDDE 35
>05_06_0033 +
25074301-25074393,25074680-25075203,25076367-25076442,
25076549-25076641,25077167-25077253,25077338-25078095,
25078447-25078575,25079145-25079265
Length = 626
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 573 ELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTLH-RQAKHL 749
E+LE E+ + S +KQ F++R P+V+ I K+ N +I + + ++ L
Sbjct: 194 EILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGINGGKINRNIEFKETLFL 253
Query: 750 LDFL 761
DF+
Sbjct: 254 SDFM 257
>11_04_0430 +
17653553-17654285,17654305-17654627,17654795-17654921,
17655123-17655338,17655463-17655494
Length = 476
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 474 ELVTEEDVRGEDQ--ENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKK 638
EL E + +G D+ E VE +W G + D +E+ ERV E+N + V +K
Sbjct: 364 ELKFEVEKKGVDENGEEVEFNLEDWDGDEEDDVLEEVYERVEREEMEENEAGVQQEK 420
>02_01_0478 -
3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 492 DVRGEDQE--NVEDEHGEWVGSDHDYSYDELLE 584
D+ E+ E ++ E GSD DY DE+LE
Sbjct: 111 DISSEESEGNSINSESDTCTGSDEDYHIDEVLE 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,068,447
Number of Sequences: 37544
Number of extensions: 278548
Number of successful extensions: 976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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