Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_I02
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)              31   0.80 
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06)                  28   9.9  
SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037)                   28   9.9  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   9.9  

>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 486 EEDVRGEDQENVEDEHGEWVGSDHDYSYDE 575
           E++  GED+EN EDE  E  G D D   +E
Sbjct: 401 EDEENGEDEENGEDEENEENGEDDDDEEEE 430


>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
          Length = 498

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 174 DLEAALAGEQGESTSMETPADTGDVDAPEDDNLDLDNF 287
           DLE A A  Q  +TS+E P D  ++D  E DNL   +F
Sbjct: 69  DLETAFA-PQFNNTSLEIPEDRPNIDVDEFDNLSRASF 105


>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 135 PSLXXXXXXXTGFDLEAALAGEQGESTSMETPADTGDVDAPE 260
           P +        G DL AA    QG    + TP D  DVD+P+
Sbjct: 498 PKIIRVASGTEGDDLPAAEQSTQGNVAMVTTPTDDVDVDSPQ 539


>SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06)
          Length = 623

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 LAGEQGESTSMETPADTGDVDAPEDDNLDLDNFG 290
           +A ++GES S+E   D        D+  D+DN G
Sbjct: 434 IARDEGESPSLEDAEDANPTPESMDNQADVDNTG 467


>SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037)
          Length = 548

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 474 ELVTEEDVRGEDQENVEDEHG 536
           EL  EEDV+ +D +NV+D  G
Sbjct: 498 ELPEEEDVKSDDTQNVDDSTG 518


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = +1

Query: 286 LAKRKRKRRRHFSISE-N*KMPCLKHR----QPKNRKRRKTK 396
           L  R RK+RRH S  +   KMP L+HR    +P  RKR++ +
Sbjct: 631 LVVRYRKKRRHLSFKQGKVKMP-LRHRFVTVRPVTRKRQRLR 671


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,565,509
Number of Sequences: 59808
Number of extensions: 319654
Number of successful extensions: 1084
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)