Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_H24
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   152   5e-38
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   152   5e-38
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    28   1.2  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    27   1.6  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    26   3.8  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    26   5.0  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   6.6  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   6.6  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   6.6  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   6.6  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   8.8  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  152 bits (368), Expect = 5e-38
 Identities = 81/174 (46%), Positives = 103/174 (59%), Gaps = 4/174 (2%)
 Frame = +3

Query: 54  LREXEVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 233
           L+E +V+GR            ++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV    
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 234 XXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 413
                      FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122

Query: 414 IK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 563
           +K VEV K    RR  VKQ  N  ++FPLP R   V        FA  RPST++
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  152 bits (368), Expect = 5e-38
 Identities = 81/174 (46%), Positives = 103/174 (59%), Gaps = 4/174 (2%)
 Frame = +3

Query: 54  LREXEVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 233
           L+E +V+GR            ++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV    
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 234 XXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 413
                      FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122

Query: 414 IK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 563
           +K VEV K    RR  VKQ  N  ++FPLP R   V        FA  RPST++
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 133 SLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRK---APSRLRILVSGYAMSL 294
           S ++   P++V   S D+ + SRRP +  S  RKF  K    PS  + L  G   SL
Sbjct: 295 SPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSL 351


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 314 VP*IP*PECRWSCHSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIP 493
           +P  P P    +  +VLQ++       SS +      SNQ   +SPST  +    HH   
Sbjct: 68  LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127

Query: 494 IAQTCAPLQET 526
            +   +P   T
Sbjct: 128 SSYAVSPTSPT 138


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 139 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 267
           ++ + PN +S IS  N R + R LVK  L+ +      SR RI
Sbjct: 21  KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 139 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 267
           ++ + PN +S IS  N R + R L+K  L+ +      SR RI
Sbjct: 21  KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 141 DPIVAKSRFWYFLRQLKKFK 200
           D ++   RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 164 TRFGDNWIRRENSHFIQGRFGLVLRRELTADN 69
           ++F DN++  ++      R G+ L REL  D+
Sbjct: 3   SQFNDNFVATDDDVGTMARVGMALDRELNGDS 34


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 494 WESDGAVVELFDLWTATRSSLDY 426
           WE  G  V+ +  W A   S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 353 HSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQH 481
           HS   R G+ T +  +  +   + SN G   +  TG T+P  H
Sbjct: 99  HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 212  TSGLLELLKLSQEIPETRFGDNWIRRENSH 123
            TSG L LL    E PE+  G+  + R + H
Sbjct: 1274 TSGNLRLLAYDPENPESHSGERLVTRGDFH 1303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,415
Number of Sequences: 5004
Number of extensions: 48508
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)