Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_H24
         (618 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal prot...   246   2e-65
AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p pro...   246   2e-65
AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA...   246   2e-65
AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p pro...    29   5.0  
AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-P...    29   5.0  
AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-P...    29   5.0  

>X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal protein
           L18a protein.
          Length = 177

 Score =  246 bits (601), Expect = 2e-65
 Identities = 117/176 (66%), Positives = 131/176 (74%)
 Frame = +3

Query: 36  MKAKGQLREXEVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 215
           M+AKG L+E EV+GR            YKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGE
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 216 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 395
           IV              NFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRAR
Sbjct: 61  IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query: 396 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 563
           AHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +RVHH      F++++P TYF
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176


>AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p
           protein.
          Length = 177

 Score =  246 bits (601), Expect = 2e-65
 Identities = 117/176 (66%), Positives = 131/176 (74%)
 Frame = +3

Query: 36  MKAKGQLREXEVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 215
           M+AKG L+E EV+GR            YKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGE
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 216 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 395
           IV              NFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRAR
Sbjct: 61  IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query: 396 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 563
           AHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +RVHH      F++++P TYF
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176


>AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA
           protein.
          Length = 177

 Score =  246 bits (601), Expect = 2e-65
 Identities = 117/176 (66%), Positives = 131/176 (74%)
 Frame = +3

Query: 36  MKAKGQLREXEVIGRXXXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 215
           M+AKG L+E EV+GR            YKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGE
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 216 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 395
           IV              NFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRAR
Sbjct: 61  IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query: 396 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 563
           AHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +RVHH      F++++P TYF
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176


>AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p
           protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 361 ATEIWELDTEPELIQYRLSKWK*SRLLRVAVHRSNSSTTAPSDSH 495
           A   W + +   L+Q R + WK S LL   +   + S    S SH
Sbjct: 45  AKTFWMIISRQPLMQSRFTAWKFSHLLHKVLREGHESAIRHSQSH 89


>AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-PB,
           isoform B protein.
          Length = 1087

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 361 ATEIWELDTEPELIQYRLSKWK*SRLLRVAVHRSNSSTTAPSDSH 495
           A   W + +   L+Q R + WK S LL   +   + S    S SH
Sbjct: 8   AKTFWMIISRQPLMQSRFTAWKFSHLLHKVLREGHESAIRHSQSH 52


>AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-PA,
           isoform A protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 361 ATEIWELDTEPELIQYRLSKWK*SRLLRVAVHRSNSSTTAPSDSH 495
           A   W + +   L+Q R + WK S LL   +   + S    S SH
Sbjct: 45  AKTFWMIISRQPLMQSRFTAWKFSHLLHKVLREGHESAIRHSQSH 89


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,369,374
Number of Sequences: 53049
Number of extensions: 558834
Number of successful extensions: 1737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)