Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_H23
(867 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 72 9e-14
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 72 9e-14
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 59 9e-10
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 57 3e-09
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 46 5e-06
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 6.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.0
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 8.0
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 26 8.0
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 72.1 bits (169), Expect = 9e-14
Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 12/153 (7%)
Frame = +1
Query: 358 FTELFAITTAKVPVLKCYHIPTGYHCDINFTSLSGIYNSKLVAYLLHLDPRAVKLAVIIK 537
F+ + I A++P++K + HCD++F +L I+NS L+ +D R L +++K
Sbjct: 967 FSNVMPIRGARIPIIK-FTGQYNIHCDLSFDNLLPIHNSDLILNYSLIDERVKTLLMLVK 1025
Query: 538 YWSKIKKITGTN--LMPNYGLTLLVIFYLQQI--CMLPSVKDLQSDVECLM--TDYWNTN 699
YW+ + I T+ +Y ++VIFYLQQI +LP+++ L + ++ DY N N
Sbjct: 1026 YWASNRLIDKTHHAFPSSYTWCIMVIFYLQQIPEPILPNLQKLSTQYSKIVRDNDYGNVN 1085
Query: 700 --FN-NNYLHRTT---NNESLYKLLGGFFSYYG 780
FN + +R + +++ LL GFF YYG
Sbjct: 1086 CWFNRDTECYRGSMQKGRKNIALLLRGFFCYYG 1118
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 72.1 bits (169), Expect = 9e-14
Identities = 45/165 (27%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Frame = +1
Query: 364 ELFAITTAKVPVLKCYHIPTGYHCDINFTSLSGIYNSKLVAYLLHLDPRAVKLAVIIKYW 543
++ ++ A+VP++K + HCD+N + N+K++ + +DPR L +IIKYW
Sbjct: 136 QIVCVSRARVPIVKIWDPQFDIHCDLNINNDVAKINTKMLRLFVSIDPRVRPLGLIIKYW 195
Query: 544 SKIKKI---TGTNLMPNYGLTLLVIFYLQ--QICMLPSVKDLQSDVECLMTDYWNTNFNN 708
+K + + G+ + +Y ++ +++ +LQ +LP++ DL S+ + M F
Sbjct: 196 AKQRALCDAAGSGTITSYTISCMLVNFLQTRNPPILPAMLDLMSNDDNKMFVDDIVGFKE 255
Query: 709 NYLHRTTNNESLYKLLGGFFSYYG-TFDFXXNIICPYLGFPIXKK 840
T N SL +LL FF YYG +F++ +++ G + K+
Sbjct: 256 K---ATLNKTSLGRLLIDFFYYYGFSFNYLDSVVSVRSGTVLNKQ 297
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 58.8 bits (136), Expect = 9e-10
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Frame = +1
Query: 364 ELFAITTAKVPVLKCYHIPTGYHCDINFTSLSGIYNSKLVAYLLHLDPRAVKLAVIIKYW 543
++ I+TAKVP++K + CD N N++L+ + DPR L V+IKYW
Sbjct: 140 KVVCISTAKVPIVKVWDSELQLSCDCNINKTISTLNTRLMRSYVLCDPRVRPLIVMIKYW 199
Query: 544 SKIKKITGT---NLMPNYGLTLLVIFYLQQ--ICMLPSVKDL-QSDVECLMTDYWNTNF- 702
+K + + + +Y ++ +VI +LQ+ +LPS++ L MTD + +F
Sbjct: 200 AKRRCLNDAAEGGTLTSYTISCMVINFLQKRDPPILPSLQMLPHLQDSSTMTDGLDVSFF 259
Query: 703 -NNNYLH--RTTNNESLYKLLGGFFSYYG-TFDF 792
+ + +H N ESL L FF ++G FD+
Sbjct: 260 DDPDLVHGFGDKNEESLGILFVEFFRFFGYLFDY 293
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 57.2 bits (132), Expect = 3e-09
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Frame = +1
Query: 385 AKVPVLKCYH-----IPTGYHCDINFTSLSGIYNSKLVAYLLHLDPRAVKLAVIIKYWSK 549
A++P++K + CDI F + I+N+ L++ LD R + +++K+W+K
Sbjct: 138 ARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAK 197
Query: 550 IKKITGT--NLMPNYGLTLLVIFYLQQICMLPSVKDLQSD--VECLMTDYWNTNFNNNY- 714
K+I + +YG L+V++YL + P +L + + D ++ F++
Sbjct: 198 RKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLE 257
Query: 715 -LHRTTNNESLYKLLGGFFSYY 777
+ + N SL LL GFF +Y
Sbjct: 258 DIPPSQNYSSLGSLLHGFFRFY 279
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 46.4 bits (105), Expect = 5e-06
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
Frame = +1
Query: 199 WPGCSVKPFXXXXXXXXXXXXDVDCYAQLPEGEIPSSRT-VIQARNRLRQFPHIFTELFA 375
WP S+ F D+D PE ++ + + L++ + +E+
Sbjct: 277 WPDVSLYVFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHHLKKLK-LASEVQV 335
Query: 376 ITTAKVPVLKCYHIPTGYHCDINFTSLSGIYNSKLVAYLLHLDPRAVKLAVIIKYWSKIK 555
ITTA VP++K T H DI+F G+ +V + P L +IIK++ ++
Sbjct: 336 ITTANVPIIKFVDPLTKVHVDISFNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHFLNMR 395
Query: 556 KITGTNL--MPNYGLTLLVIFYLQ 621
+ L + +Y + LV+ +LQ
Sbjct: 396 ALNEVFLGGLSSYAIVCLVVSFLQ 419
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 274 YAQLPEGEIPSSRTVIQARNRLRQFPH 354
+A+LP G +P S +V +A + PH
Sbjct: 136 HAELPSGSVPPSASVSRANSTATTTPH 162
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 279 PTPRGRDTIKQDSHTGTQQTETIPT 353
P P R + Q HTGT+ +T+ T
Sbjct: 1744 PNPGDRSALLQQIHTGTRLKKTVTT 1768
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 8.0
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 451 SLSGIYNSKLVA-YLLHLDPRAVKLAVIIKYWSKIK-KITGTNLMPNYGLTLLVIFYLQQ 624
+LS Y ++ A L LD R +L+ + W+K+ + N+ + G LV FY Q+
Sbjct: 40 ALSSSYEAEEKAKQLKELDFRLQQLSSFCE-WNKLAFEKLAANMDKHLGTERLVTFYEQK 98
Query: 625 ICML 636
+C L
Sbjct: 99 VCKL 102
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 8.0
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 580 PNYGLTLLVIFYLQQICMLPSVKDLQSDVECLM-TDYWNTNFNNNYLHRTTNNESLYKLL 756
P+YGL L + F + +I K + D+ +M T Y+N + H+ E + L
Sbjct: 340 PSYGLYLYLFFCIYKI------KFQKCDMNIVMLTKYFNEIWAVFIAHKEGEKEKVVAQL 393
Query: 757 GGFFSYYGTFDF 792
GF Y +F
Sbjct: 394 SGFSFYCKAIEF 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,421
Number of Sequences: 5004
Number of extensions: 66353
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -